Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1208 ATGGCGGTTGTTGAGGAAGAAAAGGAGAATGAAGTGGTGAATGGTGGAGAGCTATTGTTCTGTGGTGCCACGTGTTGGGATATGATTGGTCGGAAAAAAGGTATCGACGGTAACTTGGTTTCACCCTCCCGCCTCCGTCCTCTCATCGGGATCGATATTCGTTACATTGCCGCCGGTTGCGCTTCTTGTCATTGCGTTGCATTGGATGTTGAAGGGCGTTGCTATACATGGGGCCGTAATGATAAGGGGCAACTGGGTCATGGAGATACTGTTCAACGTGATAGGCCGACTGTGGTGTCTGAACTTTCCAAGTACAAGATTGTCAAAGCTGGAGCAGGGAAGAGTCATACAGTGGTTGTTACAGAGGATGGAAATGCCCTGGCCTTTGGATGGAACAAACATGGACAGCTTGGTTCAGGTTCTGTGCGAAATGAACTTGAGCCTACTCCTGTTCGCTGTCTCGTGTCTGAAGTAACATACACTACTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCCATTGAAGGATCTTCTATACTGACCGCTGGTCTTCCACAGTATGGACAGCTTGGGCATGGAACAGATAATGAGTATAATTCCAAAGACGGCTCTGTGAAGTTGGTTTATGAGGCCCAGCCACGTCCTCGAGCAATTGCTTCTCTTGCTGGGGAAAATATTGTCAAAGTGGCATGTGGAACAAATCACACAGTGGCGGTCGATAAGAGTGGTTATGTCTACACGTGGGGTTTTGGTGGTTATGGAAGACTAGGGCACAGAGAGCAGAAGGATGAATGGGCCCCACGCCGTGTTGATGTTTTCCAGAATAGAAATGTTTTGCCTCCTGATGCAATTATTTCAGCTGGTTCTGTGAGTTCTGCATGTACTGCAGCTGGAGGGCAGTTGTATATGTGGGGCAAATTAAAGAACAATGGTGATGACTGGATGTATCCTAAGCCTCTAATGGATTTAAGTGGTTGGAATATACGATGCATGGATTCAGGCGGTATGCACCATTTTGTTGGGGCTGATTCCTCATGCATAAGCTGGGGCCAAGCTCAGAATGGAGAGCTGGGATATGGACCTATGGGACAAAAGTCATCAGCTATACCCAAAAAAGTGGATATACTTGAGGGCATGCATGTTATGAGTGTTGCTTGTGGTATGGCCCACTCCATGGTTATCGTGGACAGAACAAATGTTGCTGAACGGCTTAACCAGCTTGATGTATATGATGGAAAAGCTTTTGGTGAAGGGAATGCGCCTGCAACTGAAACTCCAGTGCCTAAACAGACTGCAAAAAAGGGTGCAAAAGAAGCTAACAATTCAAAGAAAAGGAAAAAAGAAAAAGATTCATCGAATGAGGAAGACGAGGAAGATGTCGAAGAGAGTGACAATAGTGATGAAGATCAAGTCAATGGCGAGGCTGAGGTAAAAAGGGCAGGTAGAGGCCGAGGTAAGGCATCAACATCCAAAAAGTCAGGTGCCGATGGAAAAGGTTCCGGCCGTGGGCGTGGTCGCCCTCCAGTAAGAAATAAGGGCAGTTCTAAGTCATCTCCAGTGAAATCAGCTGGCAAGAGAGGAAGACCTCGTAAGTCGTCATGA 1602 0.4694 MAVVEEEKENEVVNGGELLFCGATCWDMIGRKKGIDGNLVSPSRLRPLIGIDIRYIAAGCASCHCVALDVEGRCYTWGRNDKGQLGHGDTVQRDRPTVVSELSKYKIVKAGAGKSHTVVVTEDGNALAFGWNKHGQLGSGSVRNELEPTPVRCLVSEVTYTTCGGDFTVWLSSIEGSSILTAGLPQYGQLGHGTDNEYNSKDGSVKLVYEAQPRPRAIASLAGENIVKVACGTNHTVAVDKSGYVYTWGFGGYGRLGHREQKDEWAPRRVDVFQNRNVLPPDAIISAGSVSSACTAAGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNIRCMDSGGMHHFVGADSSCISWGQAQNGELGYGPMGQKSSAIPKKVDILEGMHVMSVACGMAHSMVIVDRTNVAERLNQLDVYDGKAFGEGNAPATETPVPKQTAKKGAKEANNSKKRKKEKDSSNEEDEEDVEESDNSDEDQVNGEAEVKRAGRGRGKASTSKKSGADGKGSGRGRGRPPVRNKGSSKSSPVKSAGKRGRPRKSS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1208 533 MobiDBLite consensus disorder prediction 454 470 - -
Lan15g1208 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 243 298 IPR000408 -
Lan15g1208 533 Gene3D - 4 203 IPR009091 -
Lan15g1208 533 MobiDBLite consensus disorder prediction 436 453 - -
Lan15g1208 533 PANTHER PROTEIN RCC2 6 516 IPR028641 -
Lan15g1208 533 Pfam Regulator of chromosome condensation (RCC1) repeat 71 120 IPR000408 -
Lan15g1208 533 Pfam Regulator of chromosome condensation (RCC1) repeat 348 394 IPR000408 -
Lan15g1208 533 Pfam Regulator of chromosome condensation (RCC1) repeat 242 278 IPR000408 -
Lan15g1208 533 Pfam Regulator of chromosome condensation (RCC1) repeat 180 239 IPR000408 -
Lan15g1208 533 Pfam Regulator of chromosome condensation (RCC1) repeat 123 169 IPR000408 -
Lan15g1208 533 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 110 120 IPR000408 -
Lan15g1208 533 Gene3D - 204 434 IPR009091 -
Lan15g1208 533 MobiDBLite consensus disorder prediction 414 533 - -
Lan15g1208 533 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 229 239 IPR000408 -
Lan15g1208 533 PRINTS Chromosome condensation regulator RCC1 signature 73 89 IPR000408 -
Lan15g1208 533 PRINTS Chromosome condensation regulator RCC1 signature 107 120 IPR000408 -
Lan15g1208 533 PRINTS Chromosome condensation regulator RCC1 signature 126 142 IPR000408 -
Lan15g1208 533 PRINTS Chromosome condensation regulator RCC1 signature 229 245 IPR000408 -
Lan15g1208 533 PRINTS Chromosome condensation regulator RCC1 signature 245 259 IPR000408 -
Lan15g1208 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 344 397 IPR000408 -
Lan15g1208 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 177 242 IPR000408 -
Lan15g1208 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 124 174 IPR000408 -
Lan15g1208 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 72 123 IPR000408 -
Lan15g1208 533 SUPERFAMILY RCC1/BLIP-II 14 397 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1208 Lan-Chr15 20525512 20531894 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1208 - - pvu:PHAVU_009G015100g 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1208 15 20525512 20531894 Lan14g0944 14 15843728 15849901 LSH