Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1022 ATGAGTAGGCCAGGAGATTGGAACTGCAGAACATGCAACCACCTCAATTTTCAGAGAAGAGAATCATGCCAAAGATGCATGGAACCGAAGGGCACAGCTGACTTATACGGCGGCGGTGGCGGCAGCTTTGGTGGCGGCAGCTTTGGTGGCAGAGGCTCTTCCTCATTTGGTGGCTTCACTACTGGCCCTGACGTTCGCCCTGGTGACTGGTATTGCAGTCTGGGAAACTGTGGAGCCCACAACTTTGCCAGCCGCTCCAGCTGCTTCAAGTGTGGTGCCTCCAAGGAGGACTCCGCCACCGGAGGATTCGATGCCGACATGCCCCGCTTCAGAGGCTTTAGCTTTGGCAGTGGTGCTGGTGGTTTAGGTGGCGGCAGCTCCACCCGTCCTGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCTGGATGCAATGAGCACAACTTCGCTAATAGAATGGAGTGCTACAGATGCAATGCACCAAGGGACTCAACCAGTAGCAGATAA 507 0.5542 MSRPGDWNCRTCNHLNFQRRESCQRCMEPKGTADLYGGGGGSFGGGSFGGRGSSSFGGFTTGPDVRPGDWYCSLGNCGAHNFASRSSCFKCGASKEDSATGGFDADMPRFRGFSFGSGAGGLGGGSSTRPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSTSSR* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1022 168 ProSiteProfiles Zinc finger RanBP2 type profile. 133 164 IPR001876 -
Lan15g1022 168 ProSitePatterns Zinc finger RanBP2-type signature. 70 91 IPR001876 -
Lan15g1022 168 SUPERFAMILY Ran binding protein zinc finger-like 62 98 IPR036443 -
Lan15g1022 168 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Lan15g1022 168 SUPERFAMILY Ran binding protein zinc finger-like 2 31 IPR036443 -
Lan15g1022 168 Gene3D - 126 164 - -
Lan15g1022 168 Gene3D - 2 33 - -
Lan15g1022 168 Gene3D - 62 98 - -
Lan15g1022 168 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Lan15g1022 168 ProSitePatterns Zinc finger RanBP2-type signature. 137 158 IPR001876 -
Lan15g1022 168 ProSiteProfiles Zinc finger RanBP2 type profile. 66 97 IPR001876 -
Lan15g1022 168 Pfam Zn-finger in Ran binding protein and others 133 162 IPR001876 -
Lan15g1022 168 Pfam Zn-finger in Ran binding protein and others 66 97 IPR001876 -
Lan15g1022 168 Pfam Zn-finger in Ran binding protein and others 3 30 IPR001876 -
Lan15g1022 168 SMART zf_4 5 29 IPR001876 -
Lan15g1022 168 SMART zf_4 68 94 IPR001876 -
Lan15g1022 168 SMART zf_4 135 161 IPR001876 -
Lan15g1022 168 PANTHER OS02G0203700 PROTEIN 1 165 - -
Lan15g1022 168 PANTHER ZINC FINGER PROTEIN 1 165 - -
Lan15g1022 168 SUPERFAMILY Ran binding protein zinc finger-like 126 165 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1022 Lan-Chr15 19345077 19346833 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1022 - - gmx:100799240 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1022 15 19345077 19346833 Lan14g0801 14 14880568 14882663 LSH