Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0989 ATGATGGAACCCTTGTCTTCATCATCATCATCTTCTGCAATAGCACAACAAACATGGGAACTTGAAAACAACATCATCCCAATGGAAACTCCTTCTTCAACCACCAACGCCGATGACTCCATCTTCCACTACGACGAAGCTGCTCAGAACGAGTTCCATCGCGAGAAGCCTTGGATCAACGATCCTCACTACTTCAAACGCGTTAAGATCTCCGCACTCGCGCTCCTCAAGATGGTTGTTCACGCGCGTTCTGGTGGAACCATTGAGGTCATGGGTTTAATGCAAGGGAAAACCGATAAAGATGCGATCATTGTTATGGACGCTTTTGCCCTTCCCGTTGAGGGTACTGAGACACGTGTTAATGCACAAGCTGATGCGTATGAATATATGGTTGATTATTCACAGACTAATAAGCAGGCTGGGCGGTTGGAAAATGTTGTGGGATGGTATCATTCACATCCTGGTTATGGATGCTGGCTTTCTGGTATAGACGTGTCTACGCAGATGCTGAACCAACAGTTTCAGGAGCCTTTTCTGGCTGTTGTGATTGACCCAACCAGGACTGTTTCTGCTGGAAAGGTTGAGATTGGGGCATTTAGGACCTACCCTGATGGTTATAAGCCTCCGGACGAGCCTATTTCTGAGTACCAAACCATACCTCTCAACAAGATTGAAGACTTTGGTGTCCACTGTAAACAGTATTATTCCTTGGATATCACGTACTTCAAGTCTTCCCTTGACTCACACCTGTTGGATCTGCTGTGGAACAAATATTGGGTGAATACACTATCATCTTCTCCTCTGTTGGGTAATGGAGACTACGTTGCTGGACAAATCTCGGATTTAGCTGAAAAGCTAGAACAAGCAGAGAATCAGTTGGCACACTCACGCTTTGGGTCATTAATATCTCCTGCTCCTAGAAAGAAAGAAGAAGAATCTCCACTTGCTAAGATTACTCGTGATAGTGCAAAAATTACCGTAGAACAAGTCCACGGTCTTATGTCACAGGTAATCAAGGACATTCTGTTCAATTCTTCTCATCAAACAAACAAGTCTCGCGCAGAAACATCTGGCCCTGAACCAATGATTGAGAGCTGA 1098 0.449 MMEPLSSSSSSSAIAQQTWELENNIIPMETPSSTTNADDSIFHYDEAAQNEFHREKPWINDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDKDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPDGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGSLISPAPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSSHQTNKSRAETSGPEPMIES* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0989 365 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 65 176 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lan15g0989 365 Gene3D Cytidine Deaminase, domain 2 7 270 - -
Lan15g0989 365 Pfam Cop9 signalosome subunit 5 C-terminal domain 264 344 IPR040961 -
Lan15g0989 365 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 31 357 - -
Lan15g0989 365 CDD MPN_RPN11_CSN5 57 329 - -
Lan15g0989 365 PANTHER BNAC07G13420D PROTEIN 31 357 IPR037740 GO:0004222|GO:0008180
Lan15g0989 365 SMART pad1_6 67 204 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lan15g0989 365 ProSiteProfiles MPN domain profile. 68 205 IPR037518 -
Lan15g0989 365 SUPERFAMILY JAB1/MPN domain 67 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0989 Lan-Chr15 19111865 19115684 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0989 K09613 - gmx:100817371 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0989 15 19111865 19115684 Lan3g1465 3 26209554 26213247 LSH