Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0682 ATGGCTCTCTCCAAAGCCACCTTCCTCCTCCACCTCCGAACCGCCACCAACCCCCGCCGCCAACAACCCTCCACCATCTCCCTCCGCTTCCTCTCCTTCTCCTCCCCAGAAGAAGCCGCCGCTGAACGCCGCCGCCGCAAGCGCCAGCTCCGCATCGAACCACCACTCTCCGCCCTGAACCGCACCCAAACCCAAAACCAACCCAACCCCAACAACAAATCCCAAACTCCATACTACCTTAACCCCAACAACCCTAAACTCCCCGAACACGTTACCGCCCTGACCGGTAACCGTCTCAACCTCCATAACCGAATCTTAACCCTAATTCGCGAAAACGACCTCGATGAAGCTGCGCTGTACACGCGCCATTCCATTTACTCAAATTGTCGTCCCACTATATTTACCATCAATGCTGTTTTATATGCCCTGCTTCGTCAATCGAAGTACTCTGATTTGTTATCGCTGCATCGATTTATAACGCAGGCCGGGGTAGTGCCGAATATCGTCACTCATAATTTGATTTTCCAGACTTATCTTGATTGCCGCAAGCCGGATACGGCTTTGGAGCATTACAAGCAGTTTGTAAATGATGCCCCCATGAACCCTAACCCCACAACTTATCGAATTTTGATCAAGGGTTTGGTTGATAATGGTAAATTGGAACGTGCCTTGGAGATCAAGGAAGAGATGGATTCTAGAGGTTTTGCTCCTGATCCTCTTGTTTATCATTATTTGATGCTTGGTAGTGCTAGGGGTTCGGATTCGGATCGTGTTTTTGAGCTTTATGAGGATTTGAAGGGGAAATTGGGTGATGATTTGGAAGATGGGGTTGTGTATGGGAGCTTGATGAAAGGGTATTTTCTGAGGGGGATGGAGAAGGAGGCTATGGAGTGTTATGAAGAAGCTCTTGGGGTGGATTCGAAAGTGAAGATGAGCGCTGTGGGTTTTAATTCAGTGCTTGATGCATTGAGCAAGAATGGGAAGTTTGATGAGGCTTTGGCGTTGTTTGATAGGATGACGAGGGAGCATGCGCCGCCAAGAAGGTTGGCGTTGAATTTGGGGAGTTTTAACGTGATGGCGGATGGATATTGTGCTCAAGGGAGGTTTAAGGAGGCAATTGAAGTGTTCAGGAAGATGTGGGAGTTTAGGCGTAGGCCAGATACATTGTCGTTTAATAACTTGATTGAGCAGTTGTGTAACAATGGGATGATTGTGGAAGCTGAAGAGGTTTACGGGGAAATGGAGGGCAAGGGAGTGAACCCAGATGAGGTTACTTATGGATTATTGATGGATACTTGCTTTAAGGAGGATAGGCCTGATGATGCAGCTGGATATTTTAGGAAGATGGTTGATTCGGGGCTGAGGCCGAACTTGGCTGTTTACAATAGGTTGGTTGATGGCTTGGTTAAGGTTGGGAAGATCGATGAGGCAAAGTCGTTCTTTGAGCTAATGGTGAAGAAGCTGAAGCTGGATGTTGCTAGCTATCAGTTCATGATGAAGGTGCTGAGTGAGTCAGGAAGGTTGGATGAGGTGCTTCAGATCGTTGATACATTGTTGGATGACAATGGCGTTGATTTTGACGAGGAGTTCCAAGAGTTTGTTAAGGTTGAGTTGAGGAAAGAAGGGAGAGAGGATGAGTTGGCCAAATTGATGGAGGAGAAGGAAAGGCTGAAAGCTGAAGCAAAGGCTAAAGAGGCTGAGGCAGCTGAAGCTGCTAAAAGAAGTGCAAGAGCTGCAGTAGCTTCTTTGCTTCCATCCAAGTTGTTTGGGAATAAGGAAACGGATGCAGAGTCTAAACCGGAGGATGAACTTGGTGCCGAGTCAGAGTCCACAGAGAAAATATCTGAAGCTGAGGGTTCAGGTGATGGTGAGGCTAAAAGTGATAGTGCAAGTGAACAGGTAACAACAGCTTGA 1914 0.476 MALSKATFLLHLRTATNPRRQQPSTISLRFLSFSSPEEAAAERRRRKRQLRIEPPLSALNRTQTQNQPNPNNKSQTPYYLNPNNPKLPEHVTALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLYALLRQSKYSDLLSLHRFITQAGVVPNIVTHNLIFQTYLDCRKPDTALEHYKQFVNDAPMNPNPTTYRILIKGLVDNGKLERALEIKEEMDSRGFAPDPLVYHYLMLGSARGSDSDRVFELYEDLKGKLGDDLEDGVVYGSLMKGYFLRGMEKEAMECYEEALGVDSKVKMSAVGFNSVLDALSKNGKFDEALALFDRMTREHAPPRRLALNLGSFNVMADGYCAQGRFKEAIEVFRKMWEFRRRPDTLSFNNLIEQLCNNGMIVEAEEVYGEMEGKGVNPDEVTYGLLMDTCFKEDRPDDAAGYFRKMVDSGLRPNLAVYNRLVDGLVKVGKIDEAKSFFELMVKKLKLDVASYQFMMKVLSESGRLDEVLQIVDTLLDDNGVDFDEEFQEFVKVELRKEGREDELAKLMEEKERLKAEAKAKEAEAAEAAKRSARAAVASLLPSKLFGNKETDAESKPEDELGAESESTEKISEAEGSGDGEAKSDSASEQVTTA* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0682 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 487 IPR002885 -
Lan15g0682 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Lan15g0682 637 MobiDBLite consensus disorder prediction 56 82 - -
Lan15g0682 637 MobiDBLite consensus disorder prediction 39 84 - -
Lan15g0682 637 Gene3D Tetratricopeptide repeat domain 98 273 IPR011990 GO:0005515
Lan15g0682 637 Pfam PPR repeat 460 487 IPR002885 -
Lan15g0682 637 Pfam PPR repeat 355 381 IPR002885 -
Lan15g0682 637 Pfam PPR repeat 206 235 IPR002885 -
Lan15g0682 637 Pfam PPR repeat 277 301 IPR002885 -
Lan15g0682 637 Pfam PPR repeat 316 342 IPR002885 -
Lan15g0682 637 Gene3D Tetratricopeptide repeat domain 274 342 IPR011990 GO:0005515
Lan15g0682 637 Gene3D Tetratricopeptide repeat domain 449 522 IPR011990 GO:0005515
Lan15g0682 637 Pfam PPR repeat family 386 434 IPR002885 -
Lan15g0682 637 Gene3D Tetratricopeptide repeat domain 343 448 IPR011990 GO:0005515
Lan15g0682 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Lan15g0682 637 Coils Coil 540 579 - -
Lan15g0682 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Lan15g0682 637 MobiDBLite consensus disorder prediction 592 625 - -
Lan15g0682 637 MobiDBLite consensus disorder prediction 589 637 - -
Lan15g0682 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Lan15g0682 637 SUPERFAMILY TPR-like 103 517 IPR011990 GO:0005515
Lan15g0682 637 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 604 - -
Lan15g0682 637 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 604 - -
Lan15g0682 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Lan15g0682 637 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Lan15g0682 637 TIGRFAM PPR: pentatricopeptide repeat domain 316 342 IPR002885 -
Lan15g0682 637 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Lan15g0682 637 TIGRFAM PPR: pentatricopeptide repeat domain 355 387 IPR002885 -
Lan15g0682 637 TIGRFAM PPR: pentatricopeptide repeat domain 206 238 IPR002885 -
Lan15g0682 637 TIGRFAM PPR: pentatricopeptide repeat domain 460 487 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0682 Lan-Chr15 15484196 15486382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0682 290 535 Glycosyltransferase AT1G05670 25.794 8.32e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0682 - - gmx:100778705 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0682 15 15484196 15486382 Lan15g0682 15 15484196 15486382 ECH
Lan15g0682 15 15484196 15486382 Lan14g0531 14 11007019 11009204 LSH