Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0531 ATGTCTCTCTCCAAAGCCACCTTCCTCACCCACCTCCGAACCGCCACCAACCGCCACCGCCAACCACCCTCCACCATCTCCCTCCGCTTCCTCTCCTTCTCCTCCCCAGAAGAAGCCGCCGCTGAACGCCGCCGCCGTAAACGCCAACTCCGCATCGAACCCCCTCTCTCCGCCCTCAACCGCAGCCAAACCCAAACCCAAAACCAATTCAACCAAAAATCACAATCGCCCTATTACCTCAACCCCAACAACCCTAAACTCCCCGAACATGTAACCGCTCTAACCGGTAACCGTCTCAACCTCCACAACCGAATCCTCACCCTGATCCGCGAAAACGACCTTGATGAGGCTGCGTTGTACACGCGCCATTCCATTTACTCTAATTGCCGTCCCACTATCTTCACTATTAATGCTGTCCTCTACGCGCTCCTTCGGCAGTCGAAATATTCCGATTTGCTTTCGCTGCATCGGTTTATAACGCAGGCCGGGGTAGTGCCGAATATTGTCACTCATAATTTGATTTTCCAGACTTATCTTGATTGCCGCAAGGCGGATACCGCGTTGGAGCATTACAAGCAGTTTGTAAATGATGCTCCAATGAACCCTAATCCCACGACTTATCGAATTTTGATTAAGGGTTTGGTTGATAATGGTAAATTGGAACGTGCCTTGGAGATCAAGGAAGAAATGGATTCTAGGGGTTTTGCACCTGATCCTCTTGTTTATCATTATTTGATGCTTGGGTGTGCCCGGGGTTCGGATTCGGATCGTGTTTTTGAGCTTTATGAGGATCTGAAAGGGAAATTGGGAGGGGTTTTGGAAGACGGGGTTGTGTATGGGAGTTTGATGAGAGGGTATTTTTTGAGGGGGATGGAGAAGGAGGCTATGGAGTGTTACGAGGAAGCTGTTGGGGTGGATTCAAAAGTGAAGATGAGTGTTGTGGGTTATAATTCGGTGCTTGATGCGTTGAGCAAGAAAGGGAGATTCGATGAGGCTTTAAAGTTGTTCGATAGGATGATGAGGGAGCATGCGCCGCCGAGGAAGTTGGCAGTGAATTTGGGGAGTTTTAATGTGATGGCGGATGGGTATTGTGGTCAAGGGAGGTTTAAGGAAGCAATTGAAGTTTTTAGGAAGACGGAGGAGTTTAGGTGCAGGCCCGATACATTGTCGTTTAATAATTTGATTGAGCAGTTGTGTAACAATGGGCTGATTTTGGAAGCTGAGGAGGTTTATGGAGAAATGGAGGGGAAGGGGGTGAACCCTGACGAGGTTACTTACGGATTGTTGATGGATACTTGCTTCAAAGAGAATAGGCCTGATGATGCAGCTGGATATTTTAAGAAGATGGTGGATTCGGGACTGAGGCCGAACTTGGCTGTTTACAATAGGTTGGTTGATGGTTTGGTTAAGGTTGGGAAGATCGATGAAGCGAAGTCGTTCTTTGAGCTAATGGTGAAGAAGCTCAAGATGGATGTTGCTAGCTATCAGTTCATCATGAAGGTGTTAAGTGAGGCAGGAAGGTTGGACGAAGTGCTTCAGATCATTGATACGTTGTTGGATGACAATGGAGTCGATTTTGATGAGGAGTTCCAAGAGTTTGTTAAGGTAGAGTTGAGGAAAGAAGGGAGGGAAGATGAGTTGGCGAAATTGATGGAGGAGAAGGAAAGGCTGAAAGCCGAAGCTAAGGCTAAGGAGGCTGAGGCAGCTGAAGCTGCTAAAAGAAGTGCAAGAGGCGAGTTTCAAGCTCTTAAAGAAGAGAGTGCTGAGTCAGAATATGCAGAGAAAATAACTGAAGATGTGGGTTCAACTGGTGGAGAGACTAAAAGTGATAGTTCTAGTGAGAACAGGTAA 1851 0.4743 MSLSKATFLTHLRTATNRHRQPPSTISLRFLSFSSPEEAAAERRRRKRQLRIEPPLSALNRSQTQTQNQFNQKSQSPYYLNPNNPKLPEHVTALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLYALLRQSKYSDLLSLHRFITQAGVVPNIVTHNLIFQTYLDCRKADTALEHYKQFVNDAPMNPNPTTYRILIKGLVDNGKLERALEIKEEMDSRGFAPDPLVYHYLMLGCARGSDSDRVFELYEDLKGKLGGVLEDGVVYGSLMRGYFLRGMEKEAMECYEEAVGVDSKVKMSVVGYNSVLDALSKKGRFDEALKLFDRMMREHAPPRKLAVNLGSFNVMADGYCGQGRFKEAIEVFRKTEEFRCRPDTLSFNNLIEQLCNNGLILEAEEVYGEMEGKGVNPDEVTYGLLMDTCFKENRPDDAAGYFKKMVDSGLRPNLAVYNRLVDGLVKVGKIDEAKSFFELMVKKLKMDVASYQFIMKVLSEAGRLDEVLQIIDTLLDDNGVDFDEEFQEFVKVELRKEGREDELAKLMEEKERLKAEAKAKEAEAAEAAKRSARGEFQALKEESAESEYAEKITEDVGSTGGETKSDSSSENR* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0531 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 487 IPR002885 -
Lan14g0531 616 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 597 - -
Lan14g0531 616 MobiDBLite consensus disorder prediction 56 82 - -
Lan14g0531 616 MobiDBLite consensus disorder prediction 575 596 - -
Lan14g0531 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Lan14g0531 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Lan14g0531 616 Gene3D Tetratricopeptide repeat domain 350 436 IPR011990 GO:0005515
Lan14g0531 616 MobiDBLite consensus disorder prediction 39 82 - -
Lan14g0531 616 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 597 - -
Lan14g0531 616 SUPERFAMILY TPR-like 173 516 IPR011990 GO:0005515
Lan14g0531 616 Pfam PPR repeat 316 342 IPR002885 -
Lan14g0531 616 Pfam PPR repeat 355 383 IPR002885 -
Lan14g0531 616 Pfam PPR repeat 277 301 IPR002885 -
Lan14g0531 616 Pfam PPR repeat 460 487 IPR002885 -
Lan14g0531 616 Gene3D Tetratricopeptide repeat domain 98 270 IPR011990 GO:0005515
Lan14g0531 616 TIGRFAM PPR: pentatricopeptide repeat domain 355 388 IPR002885 -
Lan14g0531 616 TIGRFAM PPR: pentatricopeptide repeat domain 316 342 IPR002885 -
Lan14g0531 616 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Lan14g0531 616 TIGRFAM PPR: pentatricopeptide repeat domain 460 487 IPR002885 -
Lan14g0531 616 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Lan14g0531 616 TIGRFAM PPR: pentatricopeptide repeat domain 206 238 IPR002885 -
Lan14g0531 616 Coils Coil 540 586 - -
Lan14g0531 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Lan14g0531 616 Gene3D Tetratricopeptide repeat domain 437 613 IPR011990 GO:0005515
Lan14g0531 616 Gene3D Tetratricopeptide repeat domain 271 349 IPR011990 GO:0005515
Lan14g0531 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Lan14g0531 616 MobiDBLite consensus disorder prediction 575 616 - -
Lan14g0531 616 Pfam PPR repeat family 202 251 IPR002885 -
Lan14g0531 616 Pfam PPR repeat family 386 434 IPR002885 -
Lan14g0531 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0531 Lan-Chr14 11007019 11009204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0531 290 535 Glycosyltransferase AT1G05670 25.794 1.31e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0531 - - gmx:100778705 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0682 15 15484196 15486382 Lan14g0531 14 11007019 11009204 LSH