Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0481 ATGGTGGCTGACCTAGTCAATGCTGCAACAAGTGAGAAACTGGCTGAAACTGATTGGGCAAAAAATATTGAAATATGTGAAATAGTTGCTCATGATAAAAGGCAAGCTAGAGATGTCGTTAAAGCTATAAAAAAGAGACTGGGTAGCAAACACCCTAATACTCAACTTTATGCTGTCATGTTGCTGGAGATGTTGATGAACAATACTGGGGAGCATATTCATGAGCAGGTGATTGATACAGGGATCATTCCCGTTCTTGTGAAAATTGTGAAGAAAAAGTCAGATCTACCAGTGAGGGAGCGGGTATTTCTCCTACTAGATGCCACACAAACATCGCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTACAATGCATATTATGATTTGGTGAGTGCTGGAGTGCAGTTTACTCAAAGGACTGAAGCAGTCCAATCAAATCGTCCTAGTTCTCAACCTACTAGAAGTAGTAATATGCCGAACAGGGAGCAGGCCTCGCCTAAACATGAAGGGGTTGCTAAGCAAGCAGAATCGCAGCCTGTCCCCGAATCCAGCATCATTCAAAAGGCTAGTAATGCATTAGAAGTTCTGAAAGAAGTCCTTGACGCTGTTGATGCTCAGAATCCTCAGGGAGCAAGGGATGAATTCACTCTTGACCTTGTAGAACAATGTTCATTTCAGAAGCAAAGGGTAATGCATCTAGTGATGGCTTCTCGAGATGAGAGGATAGTTTCTCAAGCTATTGAACTAAATGAGAAGCTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTTCTGGTAGAGCTACAACAACTGCTGCTCGATTTGACCATGAAGAAGCCCAGGACGAAGAGGACCCGGAACAGTTAGTCCGAAGATTACGCAAAGGAAAGGCTTGTGCAATGCCAGAGGAGGAAGATTCTAAAACCGAGATCCCTCACTTGGGTTTGCTTGGTGAGAGACTTAACCGTCCACTAATACGGCCACTCACTTTAGAGCCATCTCGAGAAACTAATGCCCGTTCACCACCCGCTTTAATCCCACCGCTACGTGCAAAGCAGAATGGAGAACTTCCTCGTGCTGCAATTCCGCCACCACCTCCGAAACAGAATGGGGAGCTTCTTCCTATTGCCATTCCGCCACCGCCTGCAAAATACACTGAGAGGGAGAGATATTTTCAGGAAAACAAGGATGGTTCTAATCTGTCTGGCCACATGAGAGGCCTCTCTTTGCATAGTCAAAATAGCAGCAACTCTCACAGTGGAAGCTATGATTTTAGTGACTGA 1287 0.4476 MVADLVNAATSEKLAETDWAKNIEICEIVAHDKRQARDVVKAIKKRLGSKHPNTQLYAVMLLEMLMNNTGEHIHEQVIDTGIIPVLVKIVKKKSDLPVRERVFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFTQRTEAVQSNRPSSQPTRSSNMPNREQASPKHEGVAKQAESQPVPESSIIQKASNALEVLKEVLDAVDAQNPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSQAIELNEKLQKVLARHDDLLSGRATTTAARFDHEEAQDEEDPEQLVRRLRKGKACAMPEEEDSKTEIPHLGLLGERLNRPLIRPLTLEPSRETNARSPPALIPPLRAKQNGELPRAAIPPPPPKQNGELLPIAIPPPPAKYTERERYFQENKDGSNLSGHMRGLSLHSQNSSNSHSGSYDFSD* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0481 428 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Lan15g0481 428 Pfam GAT domain 192 267 IPR004152 GO:0035091|GO:0043130
Lan15g0481 428 MobiDBLite consensus disorder prediction 333 428 - -
Lan15g0481 428 MobiDBLite consensus disorder prediction 360 383 - -
Lan15g0481 428 MobiDBLite consensus disorder prediction 141 185 - -
Lan15g0481 428 MobiDBLite consensus disorder prediction 397 428 - -
Lan15g0481 428 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 3 428 - -
Lan15g0481 428 Gene3D - 1 136 IPR008942 -
Lan15g0481 428 SUPERFAMILY GAT-like domain 141 268 - -
Lan15g0481 428 PANTHER TOM1-LIKE PROTEIN 3 428 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lan15g0481 428 Coils Coil 187 207 - -
Lan15g0481 428 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Lan15g0481 428 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Lan15g0481 428 CDD VHS 2 130 - -
Lan15g0481 428 Pfam VHS domain 4 111 IPR002014 GO:0035091|GO:0043130
Lan15g0481 428 MobiDBLite consensus disorder prediction 141 164 - -
Lan15g0481 428 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Lan15g0481 428 CDD GAT_GGA_like_plant 186 264 - -
Lan15g0481 428 Gene3D - 179 275 IPR038425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0481 Lan-Chr15 11275064 11280714 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0481 - - gmx:100785131 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0481 15 11275064 11280714 Lan15g0481 15 11275064 11280714 ECH
Lan1g1527 1 25743929 25749691 Lan15g0481 15 11275064 11280714 PCT
Lan15g0481 15 11275064 11280714 Lan1g1527 1 25743929 25749691 PCT