Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0174 ATGAAGATAACTCTTATCAACTTCTTCATCATCTTATCTCTTATCTCCTTCACACATGCTTCAGTTGTAGATTTCTGTGTAGCAGATTACACAGCTCCTAATGGCCCAGCAGGATATTCATGCAAGAAACCTTCAAAAGTCACAGTTGATGATTTTGTTTACCATGGCCTTAGCATTTCTGGTAACACTTCAAACATCATAAATGCTGCAGTTTCACCAGCATTTGATGCACAATTCCCTGGTGTTAATGGCCTTGGAATTTCCATTGCTCGTTTGGATTTAGCAGTTGATGGAGTTATACCACTTCATACACATCCTGGTGCATCAGAAATACTTGTTGTAGTGCAAGGAACAATATGTGCTGGATTTGTTGCATCTGATAACACTGTTTACCTTAAAACTCTCAAAAAGGGAGACATTATGGTATTCCCTCAAGGGTTACTTCACTTTCAGGTTAATGGAGGTGGTTCTACTGCTTTGGCTTTTGTTAGCTTTAGTAGTGCAAACCCTGGTCTTCAAATTCTGGATTTTGCTTTGTTCAAAAGTGATTTTCCTACTCCATTGATAGTACAAACCACTTTCATTGATGCTGCTGTTGTGAAGAAGCTTAAGGGTGTTCTTGGAGGCTCAGGTTAA 636 0.3915 MKITLINFFIILSLISFTHASVVDFCVADYTAPNGPAGYSCKKPSKVTVDDFVYHGLSISGNTSNIINAAVSPAFDAQFPGVNGLGISIARLDLAVDGVIPLHTHPGASEILVVVQGTICAGFVASDNTVYLKTLKKGDIMVFPQGLLHFQVNGGGSTALAFVSFSSANPGLQILDFALFKSDFPTPLIVQTTFIDAAVVKKLKGVLGGSG* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0174 211 CDD cupin_OxOx 19 207 - -
Lan15g0174 211 Gene3D Jelly Rolls 19 210 IPR014710 -
Lan15g0174 211 PRINTS Germin signature 103 123 IPR001929 GO:0030145
Lan15g0174 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Lan15g0174 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Lan15g0174 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 11 207 - -
Lan15g0174 211 SUPERFAMILY RmlC-like cupins 22 205 IPR011051 -
Lan15g0174 211 ProSitePatterns Germin family signature. 98 111 IPR019780 GO:0030145
Lan15g0174 211 SMART Cupin_1_3 55 201 IPR006045 -
Lan15g0174 211 Pfam Cupin 57 182 IPR006045 -
Lan15g0174 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 11 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0174 Lan-Chr15 1875663 1876633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0174 1 210 Miscellaneous Gene Families AT5G20630 64.286 6.22e-95 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0174 - - gmx:100806553 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0174 15 1875663 1876633 Lan14g0116 14 1462902 1463577 LSH