Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0076 ATGTCGTCGAAGCCGATTCATCAGTGGAAAGTTACAGAGCTGAAAGAGGAGCTGAAGAGGAGGAGGTTAACTACTACCGGTTTGAAGAATGATTTAGTCAGGCGTTTGGATGATGCACTTCGCGCTGAAAGGGATGCCGTTGAGGCTTCCGAGAAGGAAGAGGAGGTGAATGGTTTTGAGGGTAAAGAAATTGAAGCTGAGACTGTTGCTGTGGATGATGTAGCTGTTGATAAGGTGGAGAATGAGGGAAAATTTGAAGCGGCCGAGAAGGAAAATGTTGGTGTAGTTGAACTTATTGAAATGGATAAGGCAGAAAAGGTTATGGAGGGTTTGGTTGATGACAAGCAGGATGACGTTACCATTCCAGTTGACAATAGTGCATCGGCCATAGATCAAGATGTTGAACCTACGGGCTTGCCCGCTGTTGTTGATTCTGAAAATGCGGGAGAGGAACTAGTTACTCATGCTTCTGTTGTGGAGACCACCACCACCACCATAGTCACTGAGAATGTGTTGATGGAAGTAGTAGTCGGTGGTGAAGATTCTCACAGCACTGAAAAAAATATCGATGATTCAGGAACCAAGGTGGAGAATGAGGAGTTAGAGGTGCGTCACACAGATAAGAATAATGAGGGCGCAGGAACCGAGCTGGAGAATGAGGTGTCAAATGCACAGCTGGAGAATGAGGACTCAAAGCCCCAACTGGAGTCTGACGCAAAGCCTCTGCACGAGGATCTCGTGCCCAACATTTCTGCTCCTGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGTAGGGTCTCAAGTAAAATCTGATTCTATTTCTAGTGATTCTGTGTCAATTAATGAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAGGACGGAGATGGTGGAAGAACCATCATCCAGAAATGAACCTGTTGAAGAAAATAACAATACTGTTATAAGTCCAGACTTGAACAAATCCAATAGCAGTGATGATGTGGGTTATCCAGAAAAGTTAAACTTAGATAGAAGTTCTGGAGATGATTCCATGGAGGAGGATTTGCCCGAGAGTAAGCAATTTGACTCTAAGTTCAATGTTGATGAACTGAGAGACAAAGTGGAGAGTACCGAAGTGCCTACTGTGAAGGAGGAAAATAGCACTGTTGTTGTGGGGGATGGTCAATCTGGAGGAAAAAGTTATTCCCACCAAGATATTGACATGAGTCCAGTTGATCTGGTTGAGAAACGAAAATTTAATGAACAAGCATCAGTTGGGAACAATGAGCCTGCAAAAAGGCAACGTAGGTGGAACAATGAAACAGTTAAAGGACCAGATCCACAGAGCACTACTCCCAAATCCGCTACAACACCCAAGGATGGGCCAGTTTCTCTGAAACGCAATTTCTCTAGGTCTGATTCCTTTGCAACTGATGATGCACCTAAAGAACGCATTGTTCCACCATCACAGAAGCCCCCAACTGATTCTCTCAGGATTGACCGTTTCCTCCGTCCTTTTACTCTAAAAGCAGTGCAAGAGCTTCTTGGTAAGACTGGGAAAGTTAACAGTTTCTGGATGGACCAGATAAAGACCCACTGCTATGTTACTTACTCATCCATCGAAGAAGCCATTGAGACACGAAATGCAGTTTATAATCTGCAATGGCCTCCAAATGGTGGGCGCCTCTTAGTTGCTGAGTATGTTGAGCCCGAAGAAGTGAAGATGAAGTTAGAACCTCCTACTAGTCAGGCTCCATCCCTCAGCAGTGGTCCAGCTGTTCCTCTTGCACCACCTTCTTCACAGCCAGAGCCTCCCCCCCGCCTGCACAGGGACCTGCCTCCACCTCCAGCTACTCTCCCACCTCCGCCACCATTGTTCCCACCAGTAGCAAGAGAACGGCTTCCATCACCACCACCCTTTCTTGAGAAAGCTGACCCGCCTATTGTCACTCTGGATGATCTCTTCCGCAAAACCACAGCAACTCCTCGGATCTACTATCTACCTTTGTCTGAAGAGCAAGTTGCTGCAAAACTCGCAGCACAAGGTAAAAGCTCCAGGCAGTAG 2079 0.4555 MSSKPIHQWKVTELKEELKRRRLTTTGLKNDLVRRLDDALRAERDAVEASEKEEEVNGFEGKEIEAETVAVDDVAVDKVENEGKFEAAEKENVGVVELIEMDKAEKVMEGLVDDKQDDVTIPVDNSASAIDQDVEPTGLPAVVDSENAGEELVTHASVVETTTTTIVTENVLMEVVVGGEDSHSTEKNIDDSGTKVENEELEVRHTDKNNEGAGTELENEVSNAQLENEDSKPQLESDAKPLHEDLVPNISAPENQVSEVNPSLVGSQVKSDSISSDSVSINEKNELKDTIITDNVKLEQDIVRTEMVEEPSSRNEPVEENNNTVISPDLNKSNSSDDVGYPEKLNLDRSSGDDSMEEDLPESKQFDSKFNVDELRDKVESTEVPTVKEENSTVVVGDGQSGGKSYSHQDIDMSPVDLVEKRKFNEQASVGNNEPAKRQRRWNNETVKGPDPQSTTPKSATTPKDGPVSLKRNFSRSDSFATDDAPKERIVPPSQKPPTDSLRIDRFLRPFTLKAVQELLGKTGKVNSFWMDQIKTHCYVTYSSIEEAIETRNAVYNLQWPPNGGRLLVAEYVEPEEVKMKLEPPTSQAPSLSSGPAVPLAPPSSQPEPPPRLHRDLPPPPATLPPPPPLFPPVARERLPSPPPFLEKADPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSSRQ* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0076 692 MobiDBLite consensus disorder prediction 425 502 - -
Lan15g0076 692 MobiDBLite consensus disorder prediction 215 230 - -
Lan15g0076 692 Pfam RNSP1-SAP18 binding (RSB) motif 648 687 IPR032552 -
Lan15g0076 692 MobiDBLite consensus disorder prediction 303 411 - -
Lan15g0076 692 CDD RRM_ACINU 499 583 IPR034257 -
Lan15g0076 692 Coils Coil 33 53 - -
Lan15g0076 692 SMART sap_9 6 40 IPR003034 -
Lan15g0076 692 MobiDBLite consensus disorder prediction 596 649 - -
Lan15g0076 692 ProSiteProfiles SAP motif profile. 6 40 IPR003034 -
Lan15g0076 692 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 3 689 - -
Lan15g0076 692 MobiDBLite consensus disorder prediction 342 385 - -
Lan15g0076 692 Gene3D SAP domain 6 57 IPR036361 -
Lan15g0076 692 MobiDBLite consensus disorder prediction 580 650 - -
Lan15g0076 692 MobiDBLite consensus disorder prediction 317 340 - -
Lan15g0076 692 MobiDBLite consensus disorder prediction 267 281 - -
Lan15g0076 692 Pfam SAP domain 8 40 IPR003034 -
Lan15g0076 692 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 3 689 - -
Lan15g0076 692 MobiDBLite consensus disorder prediction 386 408 - -
Lan15g0076 692 MobiDBLite consensus disorder prediction 267 290 - -
Lan15g0076 692 SUPERFAMILY SAP domain 6 43 IPR036361 -
Lan15g0076 692 MobiDBLite consensus disorder prediction 203 238 - -
Lan15g0076 692 SUPERFAMILY RNA-binding domain, RBD 493 580 IPR035979 GO:0003676
Lan15g0076 692 MobiDBLite consensus disorder prediction 446 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0076 Lan-Chr15 521328 525040 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0076 K12875 - gmx:100786288 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0076 15 521328 525040 Lan3g0995 3 21686813 21690588 LSH