Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0060 ATGGGTGCTGCGGGTTCCAAGCTTGAGAAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTACTTTGGCCTCGAGAATTTCGGCAATACTTGTTACTGCAATAGCGTTTTGCAGGCACTATACTTCTGTGTTCCATTTCGCGAACAGTTGCTAGATTATTATGGAAACAACAAAAGTCTGACTGATGCAGAGGAAAATCTTTTGACTTGCTTAGCTGACTTATTTTCGCAGATAAGTTCCCAGAAGAAAAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAAAAACAGAATGAACTATTCCGTAGCTATATGCACCAGGATGCCCACGAATTCTTGAACTTTTTGTTAAATGAACTTGTCGACATTCTGGAGAAAGAGGACCAGGCTGCAAAAAATGATGAAGAGACGTCACCACCTTCTGAAAAAGTTGCAAACGGTCCTAAGAATGGTCTATCTAATGGTGCTAAAAAGGAGCCTTTAGTTACTTGGGTGCACAAAAATTTCCAGGGAATACTCACCAACGAGACAAGGTGCTTGCAATGTGAAACTGTGACAGCTAGGGATGAAACATTTTTTGACTTGAGCCTTGATATTGAACAAAACAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCGACTGAGACGTTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCGCCTCACATCTTGGTCATCCATCTTAAGCGTTTTAAGTACATTGAGCAGCTGGGCCGATACAAGAAGCTGTCTTACCGGGTTGTCTTCCCCCTAGAGCTAAAGTTGAGTGATACAGTTGAAGAAGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGACCCAACCACGGACATTATGTCAGCCTCGTGAAAAGCCATAACCACTGGCTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTTCAGACATTCTTCGGGTCATCGCAAGAATATTCCAGTAACACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGCCAACAGGAACTAG 1104 0.4158 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYGNNKSLTDAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEDQAAKNDEETSPPSEKVANGPKNGLSNGAKKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTVEEADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIANRN* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0060 367 Gene3D Cysteine proteinases 5 362 - -
Lan15g0060 367 CDD Peptidase_C19G 24 361 - -
Lan15g0060 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Lan15g0060 367 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 365 - -
Lan15g0060 367 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
Lan15g0060 367 MobiDBLite consensus disorder prediction 133 160 - -
Lan15g0060 367 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
Lan15g0060 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Lan15g0060 367 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 365 - -
Lan15g0060 367 SUPERFAMILY Cysteine proteinases 21 361 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0060 Lan-Chr15 380900 386474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0060 24 367 Miscellaneous Gene Families AT4G31670 25.852 2.79e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0060 K11842 - gmx:100305765 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0060 15 380900 386474 Lan14g0196 14 2354465 2359885 LSH