Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0047 ATGTGTCTGAAGAAGAAAGGGGTGATTTTTTTTTCACTTGTTGACTTGACTTACTTGTTCCTTCAACCAGTTTCCCTTACAATTTCTGAAGCAATGAACCTAGAGCTAGAGGTTTGGACAGCTTTTGTTGCAGTTTTAGTGTTTGTGGGTTTTCTTCTGAAAGATATAATCATGGGAGGGAAGAGTTCAAGAGAATCTGACAGTGGAAGTAGTGTTAGGAGACATGTTCCTTCAACTTCATGGGATCATAACAATTATGGTTATGATGGTGGATACCCTTCTCATCAAAATCCATATCAAACACCTCAAAACCACCATGCATCAGCACCAGTTCTTGACTATGGTTACCAGCAGCCAAAAAGGATGTTGGATAAAAGATATTCTAGGATTGCTGATAATTACCACTCACTTGATGAGGTTACTGCTGCTCTTGCTAATGCTGGGCTGGAATCTTCTAATCTCATTGTCGGCATTGATTTCACAAAAAGCAATGAGTGGACAGGGAAGTTGTCATTCAATCGGAAGAGTTTGCATCACATTGGAGGTGGTTATAATCCATATGAACAGGCGATCTCGATTATTGGGAAAACTTTATCAGTTTTTGATGAAGATAATTTGATTCCTTGTTTCGGATTTGGAGATGCGTCAACACATGATTCAGATGTATTTTCCTTCCATTCCGATGAGAGGTTCTGCAATGGATTTGAGGAAGTTTTGACACGATACAGAGAAATTGTTCCTCAACTCAAACTCGCAGGACCCACTTCGTTTGCCCCTATTATTGAAATGGCCGTCACCATTGTCGAGCAAAGTGGTGGTCAATATCATGTCTTGCTAATAATTGCTGATGGACAGGTAACCAGAAGCATTGACACACAGCATGGCCACTTAAGTCCACAGGAAAAAAAGACGATAGATGCAATTGTAAAAGCAAGTGAGTACCCACTGTCCATAGTTTTAGTGGGAGTTGGAGATGGACCATGGGATATGATGAAAGAATTTGATGATAACATCCCTTTGCGAGCATTCGACAATTTCCAGTTTGTGAATTTTACGGAAATAATGTCAAAGAATGTTGACGCAACTAGAAGAGAGGCAGAGTTTGCCCTTGGAGCCTTGATGGAGATACCTTCTCAGTACAAGGCAACCATAGATCATGGCATATTGGGTACAAGGAGGGGACATTCACCAGATAGGGTTGCACTACCCCCACCTCTTTATGGTATTGGAAGGAATTCTTCAAGCAACACCGGAAGATCTTTCCGATCGAACAGTTTTCAGCAGAGCGCGCCTATGGATACTAGTAGAGGTCACACAGAACCATCACCGAGTTCTTTATATGATAACAGGGTATGCCCTATTTGTCTTACTAATGGGAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTGAATGTGGAGAAGACCTTGAATTATGCCCAATTTGCCGGAGCACAATCAAGACTAGAATAAAGCTTTTCTAG 1488 0.414 MCLKKKGVIFFSLVDLTYLFLQPVSLTISEAMNLELEVWTAFVAVLVFVGFLLKDIIMGGKSSRESDSGSSVRRHVPSTSWDHNNYGYDGGYPSHQNPYQTPQNHHASAPVLDYGYQQPKRMLDKRYSRIADNYHSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKLSFNRKSLHHIGGGYNPYEQAISIIGKTLSVFDEDNLIPCFGFGDASTHDSDVFSFHSDERFCNGFEEVLTRYREIVPQLKLAGPTSFAPIIEMAVTIVEQSGGQYHVLLIIADGQVTRSIDTQHGHLSPQEKKTIDAIVKASEYPLSIVLVGVGDGPWDMMKEFDDNIPLRAFDNFQFVNFTEIMSKNVDATRREAEFALGALMEIPSQYKATIDHGILGTRRGHSPDRVALPPPLYGIGRNSSSNTGRSFRSNSFQQSAPMDTSRGHTEPSPSSLYDNRVCPICLTNGKDMAFGCGHQTCCECGEDLELCPICRSTIKTRIKLF* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0047 495 Pfam Copine 176 389 IPR010734 -
Lan15g0047 495 SUPERFAMILY vWA-like 152 335 IPR036465 -
Lan15g0047 495 SMART VWA_4 151 354 IPR002035 -
Lan15g0047 495 MobiDBLite consensus disorder prediction 60 84 - -
Lan15g0047 495 MobiDBLite consensus disorder prediction 413 444 - -
Lan15g0047 495 SUPERFAMILY RING/U-box 444 490 - -
Lan15g0047 495 PANTHER COPINE FAMILY PROTEIN 1 58 495 - -
Lan15g0047 495 PANTHER RING-FINGER PROTEIN 58 495 - -
Lan15g0047 495 ProSiteProfiles Zinc finger RING-type profile. 452 485 IPR001841 -
Lan15g0047 495 Pfam Zinc finger, C3HC4 type (RING finger) 449 490 - -
Lan15g0047 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 495 IPR013083 -
Lan15g0047 495 CDD vWA_copine_like 130 380 IPR010734 -
Lan15g0047 495 CDD RING-HC_RGLG_plant 451 495 IPR045317 GO:0061630|GO:0070534
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0047 Lan-Chr15 298807 302702 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0047 K16280 - gmx:100798816 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0047 15 298807 302702 Lan3g1461 3 26166737 26170949 LSH