Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0044 ATGGGAGGACACTTAGACCCTACAGCTCAAGAGTTCATACCCTCTAACCCTTCATTCCCTCTTCCTCACATTCCTCTTGGGCTTTCCTACGCTACTCCTCACTTATCCTACACCACAACATCACCACCACCCAACATCGCCACGTCACCAACACGCTCTTTACTCATAACCCCATTCCAAATCTTCATCACTGAGTCCCTATTAAGAACTGAACTACAAGTTTTCGGTGATGTCAGAGGGGTACAAATGGAAAACTTATTAACTAACGGAACCGTTACTGTTCATTTCTATGATCTCAGACATGCACAGACGGCGTTGACGGCGATTCAGGGTCAACACATTATGCAACAAACTAGGCTTAGAAACTATTACTATTACTACTACGGTGGTTGTGGCGGTGGTGGTTCTAATTTGTTCAACTCGCCGCCGTTACCTCCACCGGCGCGTGGGCTTATTGCGGGACGCGCCGTTTGGGCTCAGTTTGCTTTGCCGGCGTGTAATGCTGTTCCTGATGGTCAGAACCAAGGGACTATAGTAGTTTTTAATTTGGACCGTGAGGTTTCAGCGAAGAATGTTCGACAAGTTTTTGAAACTTTTGGTCCTATAAAGGAATTGAGAGAAAGACCTAATAAAAAGAACCAAAGATTGATTGAGTTTTATGACATAAGAGATGCAGCAAATGCTTTGAAAAACATGGATGGGAAGAAGATTCATGGAAAAGTGGTTGTTATTGAGTATAGTAGAGAAGGAGAACACAACAGAAAGTTCTACCATTCCAATAAGCCTATCAACTTGAATGACAATGTACTATCACCACCCTCACCCTTTTCTCCTCCCTCATCGCGCTTCTCGTTCAAGAAATCATCGAGTGTTAACAAGAGGAGCGCCAAGAAGGTAAGGAATTCGGCAGGGACCATTGAAGAAGCAGTTAGTTCAATGAATTTGAGTGAGGAAGTTGTCGATGGAGTTGAAAAGAAGCGGCTGCAGCAGCAACAACAACATTCAAATGGGTCTTCAAGGAAGAATTCCATTAAAAAACATAGTAGTTGTGAGTCTATGATAGAAAGCACAAAGCATGGACAAGAAACATATAGAGGTAATAGGCATTGGAAGGGAAAGCAAAGAAAGAATCATGATACTCAGTTTCTCATACAAGAAGATGCAATTGTAGAATCTGGTTGTAGAGATACTAGAACTACTGTCATGATCAAGAACATACCCAACAAGTATAGTCAGAAGCTGCTATTAAACATGCTGGACAGCCATTGCATACAGTGCAATGAACAGATTGGTGACTGCAACAACCAGCCTTTATCCTCATTTGACTTTCTTTACCTTCCCATTGATTTCAATAACAAGTGCAATGTGGGATATGGGTTTGTGAACATGACATCTCCAGAGGCAACTATGAGGCTCTATAAGGCTTTCCATCATAAACATTGGGAAGTCTTCAATTCTAGAAAAATCTGTCAAGTCACCTATGCTAGAGTTCAGGGGTTGGAAGCATTGAAAGAGCACTTCAAGAACTCAAGGTTCCCATGCGAGCTAGATCATCACATGCCAGTGATGTTTTCTCCACCTCGTGATGGTATGAAGGAATTAACAGAACCATTTCCAATAGTTGCCAACAGCAACAACAAAACCATTCCAATTCCAATAACAATTAGTGTCACCAACTCTAGTGAAGATAGTAGCAGCATCAGAAGCAGAAGTGTTGATGATAATAGTGAAGTATAA 1737 0.4185 MGGHLDPTAQEFIPSNPSFPLPHIPLGLSYATPHLSYTTTSPPPNIATSPTRSLLITPFQIFITESLLRTELQVFGDVRGVQMENLLTNGTVTVHFYDLRHAQTALTAIQGQHIMQQTRLRNYYYYYYGGCGGGGSNLFNSPPLPPPARGLIAGRAVWAQFALPACNAVPDGQNQGTIVVFNLDREVSAKNVRQVFETFGPIKELRERPNKKNQRLIEFYDIRDAANALKNMDGKKIHGKVVVIEYSREGEHNRKFYHSNKPINLNDNVLSPPSPFSPPSSRFSFKKSSSVNKRSAKKVRNSAGTIEEAVSSMNLSEEVVDGVEKKRLQQQQQHSNGSSRKNSIKKHSSCESMIESTKHGQETYRGNRHWKGKQRKNHDTQFLIQEDAIVESGCRDTRTTVMIKNIPNKYSQKLLLNMLDSHCIQCNEQIGDCNNQPLSSFDFLYLPIDFNNKCNVGYGFVNMTSPEATMRLYKAFHHKHWEVFNSRKICQVTYARVQGLEALKEHFKNSRFPCELDHHMPVMFSPPRDGMKELTEPFPIVANSNNKTIPIPITISVTNSSEDSSSIRSRSVDDNSEV* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0044 578 MobiDBLite consensus disorder prediction 258 304 - -
Lan15g0044 578 CDD RRM3_EAR1_like 398 499 IPR034458 -
Lan15g0044 578 MobiDBLite consensus disorder prediction 325 377 - -
Lan15g0044 578 Gene3D - 316 504 IPR012677 -
Lan15g0044 578 Gene3D - 168 262 IPR012677 -
Lan15g0044 578 SUPERFAMILY RNA-binding domain, RBD 176 480 IPR035979 GO:0003676
Lan15g0044 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 249 IPR000504 GO:0003723
Lan15g0044 578 PANTHER RNA BINDING PROTEIN 35 555 - -
Lan15g0044 578 SMART rrm1_1 177 245 IPR000504 GO:0003723
Lan15g0044 578 SMART rrm1_1 53 121 IPR000504 GO:0003723
Lan15g0044 578 PANTHER TERMINAL EAR1-LIKE 1 35 555 - -
Lan15g0044 578 MobiDBLite consensus disorder prediction 280 304 - -
Lan15g0044 578 MobiDBLite consensus disorder prediction 329 343 - -
Lan15g0044 578 Pfam RNA recognition motif 2 398 508 IPR007201 -
Lan15g0044 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 242 IPR000504 GO:0003723
Lan15g0044 578 SUPERFAMILY RNA-binding domain, RBD 41 116 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0044 Lan-Chr15 274390 277997 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0044 - - lang:109344156 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0044 15 274390 277997 Lan3g1457 3 26119087 26123051 LSH