Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0020 ATGTCGTCTGAGATGGCTAACACAGATCCAGAAGGCCTCGACGGAATTCGCATGACATGGAACGTATGGCCACGCTCCAAAGTAGATTCCTCCAAGTGCGTGATCCCACTCGCCGCCACCATCTCCTTAATCAAACCCCACCCTCACATCCCACGTCTCCCCTACGCGCCACTCCGTTGCAAAACTTGCTCTTCACCACTCAACCCCTTCTCGCGCGTCGACTTCACCGCCAATATCTGGATTTGCCCCTTCTGTTACCAGCGCAACCATTTCCCTCCTCATTACAGCACCATCTCCGAAACCAACCTCCCCGGTGAACTCTATCCTCACTACACCACCGTTGAATATGTCAATCCAATTTCAAATTCTTTCCATCAGTTTCCATCTAATAATTCCACTTCACCGGTTTTTTTGTTCGTGCTTGATACTTGTATGATTGATGAGGAGATGGAGTTTGTGAAATCGGCATTGCGCCGTGCAATTGGCCTTTTGCCTGATAATGCACTTGTTGGGTTTGTTTCATTTGGGACGCAGGTGGAAGTTCATGAGTTGGGGTTCTCTGATATGTCTAAAGTTTATGTTTTTCGCGGTTCCAAGGAAATTCCAAAGGAACAGGTTTTGGAGCAGTTGGGGCTCGGTGCTGGTGGTGGTGCTTCAGGGAGGAGACCTGGTGGTGTTGGTCCCGGTGGTGGCTATCAGAAAGGAGGGGTGCAGGGTGCTGCTGCTGGTTTTCCGGGTTCGGCGGTTACAAGGTTTTTGTTGCCTGCATCTGATTGTGAATACACTCTCAATGCGCTGTTAGATGAATTGCAAACTGACCAATGGCCAGTTCCCCCTGGGAGTCGCCCGGCTCGGTGTACTGGAGTGGCCTTGAGTGTTGCTATGGGATTACTTGGTGCTTGTAATCCTGGGACTGGAGCTAGAATCATAACTTTGGTTGGTGGTCCTTGCACTGAAGGACCAGGCACGATTGTGTCCAAAGATCTATCTGACCCAGTGCGATCTCATAAAGATCTTGACAAAGATGCAGCACCATACTTTAAGAAAGCAGTCAAATTTTATGAGAGTCTTGCAAAACAGCTAGTTAGCCAAGGTCACGTTTTGGATATTTTTGCTTCAGCACTTGATCAGGTTGGAGTTGCAGAAATGAAAGTTGCTGTTGAAAGAACTGGCGGCCTTGTTGTCCTGTCTGAAAGTTTTGGTCATTCAGTCTTCAAGGATTCTTTTAAGCGTATTTTTGAGGATGGGGAGCAATCTCTTAGTCTTTGTTTCAATGGGATGCTTGAGATAAATTGCTCAAAGGAAGTCAAAATTCAGGGAATAATTGGACCTTGTACATCATTAGAAAAGAAAGGTCCTTCTGTTGCTGATACTGTTATAGGAGAGGGGAACACGACAGCATGGAAGATGTGTGGTCTTGACAAGAGTACATGCTTGACGGTGATGTTCGATCTTTCATCAAGTGATCGTTCAAACACGCCAGGTGCTGTCAATCCGCAGTTGTACCTGCAGTTCCTTACAAGTTATCAGGGCCCGGATGGTCAGTCAGTGCTTCGTGTCACAACAGTAACTAGAAGATGGGTAGATAGTTCTGTTAGCTCTGAGGAATTGATTCAAGGATTTGACCAAGAAACTGCTGCAGTGGTAATGGCTAGATATGCTTCTTTGAAAATGGAGACCGAGGAAACATTTGATGCTACACGGTGGTTGGACCGGTTCCTCATTCGCCTATGTTCTAAGTTTGGTGACTACCGCAAGGATGATCCTTCATCTTTTACATTAAATCCTTCATTTTCGTTGTTCCCCCAGTTTATGTTCAATCTACGACGGTCACAGTTTTTTCAGGTTTTTAACAACAGTCCAGACGAAACTGCCTACTTCCGCATGTTGTTGAACAGAGAAAATATTAGTAATGCTGCTGTCATGATTCAGCCATCTCTAATATCATATTCATTTAATTCACCGCCTGCACCAGCATTGTTAGATGTGGCTTCCATTGCTGCAGACCGGATTCTTCTGCTAGATTCATATTTCAGTGTGGTCATTTTTCATGGGATGACGATAGCTCAATGGCGCAACTTGGGTTACCAGAACCAACCAGAACACCAGGCATTTGCACAGCTATTACAAGCTCCACACGATGATGTCCAAATGATAGTTAGAGATCGATTCCCTGTTCCTAGATTGGTAGTGTGTGATCAACATGGTTCCCAGGCTAGATTTTTGTTAGCAAAGTTGAACCCATCAGCAACATATAATAACACACACGAGATGACAGCTGGTTCGGATGTAATCTTCACTGACGATGTGAGCCTTCAAGTTTTCTTTGAGCATCTGCAAAAGCTGGCTGTCCAATCTTGA 2361 0.4562 MSSEMANTDPEGLDGIRMTWNVWPRSKVDSSKCVIPLAATISLIKPHPHIPRLPYAPLRCKTCSSPLNPFSRVDFTANIWICPFCYQRNHFPPHYSTISETNLPGELYPHYTTVEYVNPISNSFHQFPSNNSTSPVFLFVLDTCMIDEEMEFVKSALRRAIGLLPDNALVGFVSFGTQVEVHELGFSDMSKVYVFRGSKEIPKEQVLEQLGLGAGGGASGRRPGGVGPGGGYQKGGVQGAAAGFPGSAVTRFLLPASDCEYTLNALLDELQTDQWPVPPGSRPARCTGVALSVAMGLLGACNPGTGARIITLVGGPCTEGPGTIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYESLAKQLVSQGHVLDIFASALDQVGVAEMKVAVERTGGLVVLSESFGHSVFKDSFKRIFEDGEQSLSLCFNGMLEINCSKEVKIQGIIGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRSNTPGAVNPQLYLQFLTSYQGPDGQSVLRVTTVTRRWVDSSVSSEELIQGFDQETAAVVMARYASLKMETEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFFQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISYSFNSPPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLQAPHDDVQMIVRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNTHEMTAGSDVIFTDDVSLQVFFEHLQKLAVQS* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0020 786 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 785 - -
Lan15g0020 786 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 645 785 IPR036180 -
Lan15g0020 786 Gene3D Sec23/Sec24 helical domain 539 783 - -
Lan15g0020 786 Gene3D von Willebrand factor, type A domain 134 422 IPR036465 -
Lan15g0020 786 SUPERFAMILY Zn-finger domain of Sec23/24 48 119 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lan15g0020 786 Pfam Sec23/Sec24 trunk domain 134 413 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lan15g0020 786 Pfam Sec23/Sec24 zinc finger 57 95 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lan15g0020 786 Pfam Gelsolin repeat 655 742 IPR007123 -
Lan15g0020 786 Gene3D - 54 113 - -
Lan15g0020 786 SUPERFAMILY beta-sandwich domain of Sec23/24 9 541 - -
Lan15g0020 786 CDD Sec23_C 634 754 IPR037550 GO:0030127|GO:0090114
Lan15g0020 786 Pfam Sec23/Sec24 beta-sandwich domain 424 528 IPR012990 -
Lan15g0020 786 SUPERFAMILY vWA-like 135 414 IPR036465 -
Lan15g0020 786 Gene3D Severin 644 748 IPR029006 -
Lan15g0020 786 SUPERFAMILY Helical domain of Sec23/24 542 644 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lan15g0020 786 Pfam Sec23/Sec24 helical domain 542 638 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lan15g0020 786 Gene3D - 11 525 - -
Lan15g0020 786 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 785 IPR037364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0020 Lan-Chr15 131912 139173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0020 K14006 - gmx:100813940 1374.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0020 15 131912 139173 Lan14g0234 14 2606080 2613477 LSH