Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0508 ATGTATATAGCTACCTCTTCTCTTCTCAGAGCAACCAGATCTAAAATTATATCTTCTTCTATTTCTAGAACCTTCTCTTATCATTCTTCTTCAACATATCGCTCATTTTCCTCAACCGTCGCTCGATCGTTCTGCTCCTCCGTTCCCCGCTGGAGCCACCGCATCGATTGGCGCTATCCGTTCACTCTTCGCTCTCAGATCAGAGCCGTTGCTCCTGTCATCGAACGCTTCCACCGCAAGATCGCCACCATCGCTAATGAAAATCCTTTCAAGGGAAACTTGACAAGCCTCCCCAAGCCCGGTGGTGGCGAGTTTGGGAAATTCTACAGTCTTCCTTCTCTCAATGATCCAAGAATCGACAGATTGCCATACTCTATCAGAATTCTCCTTGAATCTGCCATTCGTAATTGTGACAATTTCCAAGTCACCAAAGAAGATGTTGAGAAGATCATTGACTGGGAAAACAGTTATACAAAGCAAGTTGAGATTCCTTTCAAACCTGCTCGTGTTCTCTTGCAGGATTTTACTGGAGTCCCAGCTGTTGTCGACCTGGCTTGCATGCGTGATGCAATGAATAAGCTTGGCGGTGATTCTAATAAGATCAATCCTCTGGTTCCTGTTGATCTTGTCGTTGATCATTCTGTTCAAGTGGATGTAGCAAGGTCTGAAAATGCAGTGCAGGCCAATATGGAGCTTGAATTCCAAAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGGTCAACTGCGTTCCGTAATATGCTTGTAGTTCCTCCAGGCTCTGGCATAGTACATCAGGTCAATCTTGAATATCTTGGACGGGTTGTTTTCAACAATGAGGGTTTACTCTATCCTGACAGTGTGGTTGGGACTGATTCACATACAACTATGATAGATGGGCTTGGTGTTGCTGGATGGGGTGTTGGAGGTATTGAGGCTGAGGCAGCAATGCTTGGCCAGCCTATGAGCATGGTGTTGCCTGGTGTTGTTGGGTTCAAGTTATCTGGAAAATTGCGGGATGGTGTTACAGCAACTGACTTGGTTCTAACTGTAACTCAAATTCTTAGGAAGCATGGCGTTGTTGGAAAATTTGTTGAATTTTATGGTGATGGTATGGGTAAATTATCTTTAGCTGACAGGGCTACTATTGCTAACATGTCTCCTGAATATGGTGCTACCATGGGCTTCTTCCCTGTGGATCATGTTACATTACAATATCTCAAATTAACTGGAAGAAGTGATGAAACTGTGGCCATGATAGAGACTTATCTCAGGGCAAACAACATGTTTGTTGACTATAATGAGCCACAACAAGACAGAGTTTATTCATCGTATCTTGAATTAAACCTATCCGATGTTGAACCATGCATCTCAGGACCGAAGAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGACTGGCATTCTTGTCTTGATAGCAAAGTTGGGTTTAAGGGATTTGCTATACCAAAAGAAGCACAAGGAAAAGTTGCAAAATTTGATTTCCATGGGCAGCCAGCAGAGCTCAAGCATGGCAGTGTTGTGATTGCTGCAATCACAAGTTGTACAAATACATCAAACCCAAGTGTTATGCTTGGAGCTGGTCTGGTTGCAAAAAAGGCCCACGAGCTTGGTTTGCAGGTCAAGCCTTGGGTTAAAACAAGTCTTGCGCCAGGCTCTGGAGTTGTTACAAAATATCTACTCCAGAGTGGACTCCAGAAATATCTAAATGAACAAGGTTTTCACATTGTTGGGTTTGGCTGTACAACATGTATTGGCAATTCTGGGGACCTGAATGAATCCGTTGCCTCTGCCATCTCGGAAAATGATATTGTAGCGGCTGCTGTGTTGTCTGGAAACCGTAATTTTGAGGGCCGTGTGCATGCCTTGACAAGAGCTAACTACCTTGCCTCACCTCCTCTAGTTGTTGCTTATGCCCTTGCTGGCACGGTTGACATTGATTTTGAGAAAGAACCAATTGGAACTGGGAAGGATGGCAAGAATGTGTTCTTGAGGGATATCTGGCCATCTAATGAGGAAATTGCAGAGGCTGTCCAATCTAGTGTGTTGCCTAACATGTTCCGTAGTACATATGAGGCTATTACCAAGGGCAACCCTATGTGGAATCAATTACAAGTTCCAGCTGACAAACTCTACTCATGGGACACCAACTCAACATATATTCATGAACCTCCATACTTCAAGAACATGACCATGGATCCTCCTGGAGCTCATGGTGTGAAAGATGCTTATTGCCTGCTGAACTTTGGTGACAGTATAACCACTGATCACATATCTCCAGCTGGAAGCATTCACAAGGACAGTCCTGCTGCTAAATACCTTCTGGAGCGTGGGGTGGATCGCAAGGACTTCAATTCATATGGAAGTCGGCGTGGCAATGATGAGGTGATGGCAAGGGGAACTTTTGCCAACATTCGTCTTGTTAACAAGCTCCTGAATGGTGAAGTTGGTGCCAAGACAGTTCACATTCCTACAGGGGAGAAGCTTTATGTGTTTGAAGCAGCAATGAGATACAGATCTGCTGGGGAAGACACCATTGTGATTGCTGGAGCTGAATATGGCAGTGGAAGTTCTAGAGATTGGGCTGCCAAGGGTCCAATGCTATTGGGAGTCAAAGCTGTAATAGCTAAAAGTTTTGAGAGAATTCATCGCAGTAATTTGGTAGGAATGGGCATCATCCCTCTTTGCTTCAAATCCGGGGAAGATGCTGACACATTAGGATTGACTGGTCATGAACGTTATACAATTGACTTACCAAGTAAAATCAGTGAGATTAGGCCTGGCCAAGATGTCACAGTCACAACTGATAATGGAAAATCTTTCACCTGCACAGTACGCTTTGACACTGAGGTTGAACTTGCCTACTTCAACCATGGTGGCATTCTTCCATATGTCATAAGGAACCTGATTAAGTAG 2943 0.4421 MYIATSSLLRATRSKIISSSISRTFSYHSSSTYRSFSSTVARSFCSSVPRWSHRIDWRYPFTLRSQIRAVAPVIERFHRKIATIANENPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENSYTKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVVDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGKLSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIETYLRANNMFVDYNEPQQDRVYSSYLELNLSDVEPCISGPKRPHDRVPLKEMKADWHSCLDSKVGFKGFAIPKEAQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGFGCTTCIGNSGDLNESVASAISENDIVAAAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKNVFLRDIWPSNEEIAEAVQSSVLPNMFRSTYEAITKGNPMWNQLQVPADKLYSWDTNSTYIHEPPYFKNMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGAKTVHIPTGEKLYVFEAAMRYRSAGEDTIVIAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSKISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLIK* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0508 980 PRINTS Aconitase family signature 230 243 IPR001030 -
Lan13g0508 980 PRINTS Aconitase family signature 254 262 IPR001030 -
Lan13g0508 980 PRINTS Aconitase family signature 283 296 IPR001030 -
Lan13g0508 980 PRINTS Aconitase family signature 297 312 IPR001030 -
Lan13g0508 980 PRINTS Aconitase family signature 359 372 IPR001030 -
Lan13g0508 980 PRINTS Aconitase family signature 373 386 IPR001030 -
Lan13g0508 980 PRINTS Aconitase family signature 455 469 IPR001030 -
Lan13g0508 980 PRINTS Aconitase family signature 520 531 IPR001030 -
Lan13g0508 980 PRINTS Aconitase family signature 582 595 IPR001030 -
Lan13g0508 980 Pfam Aconitase C-terminal domain 780 907 IPR000573 -
Lan13g0508 980 CDD AcnA_IRP 169 653 - -
Lan13g0508 980 Gene3D - 680 741 - -
Lan13g0508 980 CDD AcnA_IRP_Swivel 757 927 IPR044137 -
Lan13g0508 980 Pfam Aconitase family (aconitate hydratase) 148 651 IPR001030 -
Lan13g0508 980 Gene3D Aconitase, domain 3 87 455 IPR015931 -
Lan13g0508 980 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 54 978 IPR006249 -
Lan13g0508 980 ProSitePatterns Aconitase family signature 1. 516 532 IPR018136 -
Lan13g0508 980 Gene3D Aconitase, domain 4 744 980 IPR015928 -
Lan13g0508 980 SUPERFAMILY LeuD/IlvD-like 720 979 - -
Lan13g0508 980 ProSitePatterns Aconitase family signature 2. 582 595 IPR018136 -
Lan13g0508 980 TIGRFAM aconitase_1: aconitate hydratase 1 106 979 IPR006249 -
Lan13g0508 980 SUPERFAMILY Aconitase iron-sulfur domain 102 716 IPR036008 -
Lan13g0508 980 Gene3D Aconitase, domain 3 456 679 IPR015931 -
Lan13g0508 980 PANTHER ACONITATE HYDRATASE 54 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0508 Lan-Chr13 3769142 3778533 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0508 K01681 - gmx:100778506 1776.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1545 8 22492403 22500333 Lan13g0508 13 3769142 3778533 LSH
Lan13g0508 13 3769142 3778533 Lan10g0030 10 160521 167908 PCT