Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0030 ATGTACTCTTCAGTATCTTCTTCTGCTTCTTCCCTTCTCATTCGAGCTTCAATAAGATCTAGATTATTCTCTTCTCTTTCTAGAACAACCACTTCTTTATCTTCTCGTTCCTTCATCTCTTCTTTCTCACGTTCTACCAATCCTCTCTATTTCCGTTCACCTCTCAGTCTCCGTGCTCAGATCAGAACCCTTCCTCCCCTCATCCAACGCTTCCATCGCACCATCGCTACCAACGCCACTGAAAATCCTTTCAAGGGAAATCTTACGAATCTTCCTAAGCCTGGTGGTGGCGACTTTGGAAAGTTCTATAGTCTTCCTTCTCTTAACGACCCTAGAGTTGATAAGTTACCATACTCTATCAGAATTCTCCTTGAATCTGCCATTCGTAATTGTGACAATTTCCAAGTTACTAAGGAAGATGTTGAGAAGATTATTGACTGGGAAATCACTTCTGGAAAGCAAGTTGAGATTCCTTTCAAGCCTGCTCGTGTTCTCCTACAGGATTTTACTGGAGTCCCAGCTGTTGTTGACCTGGCTTGCATGCGTGATGCTATGAATAAGCTCGGCAGTGATTCTAACAAGATCAATCCCCTGGTTCCTGTTGATCTTGTCATTGATCATTCCGTTCAAGTGGATGTTGCAAGGTCAGAGAATGCAGTGCAGGCCAATATGGAGCTTGAGTTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGCTCAACTGCTTTCCGTAATATGCTTGTTGTTCCTCCAGGTTCTGGTATAGTACACCAGGTCAATCTTGAATATCTTGGACGGGTTGTTTTCAACAGTGAGGGCTTACTCTATCCTGACAGTGTGGTGGGGACCGATTCACATACAACTATGATAGATGGGCTTGGAGTTGCTGGATGGGGTGTTGGTGGTATTGAAGCAGAGGCCGCAATGCTTGGCCAGCCAATGAGCATGGTGTTACCCGGTGTTGTTGGGTTTAATTTATCTGGGAATTTGCGCAATGGTGTTACAGCAACTGACTTGGTTCTAACTGTGACACAAATGCTTAGGAAACATGGTGTTGTTGGGAAATTTGTTGAGTTTTATGGCGATGGTATGGGTAAATTATCGTTAGCTGACAGGGCCACCATTGCCAACATGTCTCCTGAATATGGAGCAACCATGGGCTTCTTCCCTGTTGATCATGTTACATTACAATACCTCAAATTAACTGGAAGAAGTGATGAGACCGTGACAATGATTGAGGCTTATCTCAGGGCAAACAACCTGTTCGTTGACTACAATGAGCCTCAACAAGACAGAGTTTATTCTTCCTATCTTGAATTGAACCTTGATGAAGTTGAGCCGTGTATCTCTGGACCAAAGAGACCTCATGATCGGGTGCCATTGAAAGAAATGAAGGCTGATTGGATTGCTTGTCTCGATAACAAAGTTGGGTTTAAGGGATTTGGTATTCCAAAAGAAGCACAAGGCAAAGTCGCAAGATTTGATTTCCATGGGCAGCCAGCAGAGCTCAAGCATGGCAGCGTTGTGATTGCTGCAATCACAAGTTGTACAAATACGTCAAACCCGAGTGTGATGCTTGGTGCTGGTCTTGTTGCAAAGAAAGCTCATGAGCTAGGTTTGCAGGTCAAGCCTTGGGTAAAGACAAGTCTTGCCCCAGGCTCAGGAGTTGTTACAAAGTATTTGCTTCAGAGTGGCCTGCAGAAGTATTTAAATGAACAGGGTTTCAATATTGTTGGATATGGCTGTACAACATGTATTGGCAATTCAGGGGATGTGGACGAATCAGTTGCTTCTGCTATCTCAGAAAATGACATTGTTGCGGCTGCTGTGTTATCTGGGAACCGTAATTTTGAGGGCCGTGTGCATCCCTTGACAAGAGCTAATTACCTTGCCTCGCCTCCTCTAGTTGTTGCTTATGCTCTTGCTGGCACAGTTAACATTGACTTTGAAAAGGAGCCAATAGGGACAGGGAAGGATGGCAAGAATGTCTACTTGAGGGATATATGGCCTTCCACCAATGAAATTGCAGAGGCTGTCCAATCCAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAAGCTATTACCAAGGGTAACCCTATGTGGAACCAACTCCAAGTTCCTACAGACACCTCTTACTCATGGGACCCCAAGTCAACATATATTCATGAACCTCCATACTTCAAGGGTATAACCATGGATCCTCCAGGAGCTCATGGTGTGAAAGATGCTTATTGCATACTGAATTTTGGTGACAGTATAACTACTGATCACATTTCTCCTGCTGGAAGCATTAACAAGGACAGTCCTGCTGCAAAATACCTTCTGGAGCGTGGGGTGGAACGCAAGGACTTCAATTCATATGGAAGTCGCCGTGGCAATGATGAGGTGATGGCAAGGGGGACTTTTGCCAACATTCGCCTTGTCAATAAGCTGTTGAATGGGGAAGTTGGACCGAAGACAGTTCACATTCCTACGGGGGAGAAACTTTTTGTGTTCGATGCAGCAATGAGATACAAAGCTTCAGGGCAGGACACCATTGTGCTGGCTGGAGCCGAATATGGTAGTGGAAGTTCCCGAGATTGGGCTGCCAAGGGTCCCATGCTATTGGGAGTCAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATTCATCGCAGTAATTTGGTAGGAATGGGTATAATTCCTCTTTGCTTCAAAGCCGGTGAGGATGCTGACTCACTGGGCTTGACTGGTCATGAACGTTATACCATTGACCTCCCAAGTAAAATCAGTGAGATAAGGCCTGGCCAAGACGTCACTGTCACAACTGATACTGGAAAGTCTTTCACCTGCACAGCTCGTTTTGACACCGAGGTGGAACTTGCTTACTTCAACCATGGAGGCATACTTCCATATGTCATCAGAAACCTCATTAAGCAGTGA 2928 0.4488 MYSSVSSSASSLLIRASIRSRLFSSLSRTTTSLSSRSFISSFSRSTNPLYFRSPLSLRAQIRTLPPLIQRFHRTIATNATENPFKGNLTNLPKPGGGDFGKFYSLPSLNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEITSGKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNSEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFNLSGNLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMGKLSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVTMIEAYLRANNLFVDYNEPQQDRVYSSYLELNLDEVEPCISGPKRPHDRVPLKEMKADWIACLDNKVGFKGFGIPKEAQGKVARFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGDVDESVASAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVNIDFEKEPIGTGKDGKNVYLRDIWPSTNEIAEAVQSSVLPDMFRSTYEAITKGNPMWNQLQVPTDTSYSWDPKSTYIHEPPYFKGITMDPPGAHGVKDAYCILNFGDSITTDHISPAGSINKDSPAAKYLLERGVERKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHIPTGEKLFVFDAAMRYKASGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERYTIDLPSKISEIRPGQDVTVTTDTGKSFTCTARFDTEVELAYFNHGGILPYVIRNLIKQ* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0030 975 Gene3D Aconitase, domain 4 738 974 IPR015928 -
Lan10g0030 975 ProSitePatterns Aconitase family signature 1. 510 526 IPR018136 -
Lan10g0030 975 ProSitePatterns Aconitase family signature 2. 576 589 IPR018136 -
Lan10g0030 975 SUPERFAMILY LeuD/IlvD-like 715 973 - -
Lan10g0030 975 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 50 975 IPR006249 -
Lan10g0030 975 PANTHER ACONITATE HYDRATASE 50 975 - -
Lan10g0030 975 Gene3D - 674 735 - -
Lan10g0030 975 TIGRFAM aconitase_1: aconitate hydratase 1 100 973 IPR006249 -
Lan10g0030 975 Gene3D Aconitase, domain 3 81 449 IPR015931 -
Lan10g0030 975 Gene3D Aconitase, domain 3 450 673 IPR015931 -
Lan10g0030 975 CDD AcnA_IRP 163 647 - -
Lan10g0030 975 CDD AcnA_IRP_Swivel 751 921 IPR044137 -
Lan10g0030 975 Pfam Aconitase C-terminal domain 774 902 IPR000573 -
Lan10g0030 975 Pfam Aconitase family (aconitate hydratase) 142 645 IPR001030 -
Lan10g0030 975 SUPERFAMILY Aconitase iron-sulfur domain 96 710 IPR036008 -
Lan10g0030 975 PRINTS Aconitase family signature 224 237 IPR001030 -
Lan10g0030 975 PRINTS Aconitase family signature 248 256 IPR001030 -
Lan10g0030 975 PRINTS Aconitase family signature 277 290 IPR001030 -
Lan10g0030 975 PRINTS Aconitase family signature 291 306 IPR001030 -
Lan10g0030 975 PRINTS Aconitase family signature 353 366 IPR001030 -
Lan10g0030 975 PRINTS Aconitase family signature 367 380 IPR001030 -
Lan10g0030 975 PRINTS Aconitase family signature 449 463 IPR001030 -
Lan10g0030 975 PRINTS Aconitase family signature 514 525 IPR001030 -
Lan10g0030 975 PRINTS Aconitase family signature 576 589 IPR001030 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0030 Lan-Chr10 160521 167908 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0030 K01681 - gmx:100794803 1749.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0030 10 160521 167908 Lan7g0425 7 2998695 3012766 PCT
Lan8g1545 8 22492403 22500333 Lan10g0030 10 160521 167908 PCT
Lan13g0508 13 3769142 3778533 Lan10g0030 10 160521 167908 PCT