Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0402 ATGCCATCATCACTATTTTCTTTCCTCTATGTGGCTCCTCTCTTTTCTTTTCTTTCACTCTCATCAATTATTTCTTCTAGTGCTCAACGTCCACCTTCACCTGGATACTACCTTACTTCTAAAATAAGTACTGTTAACTTTGATCAAGGGTTTAGAAACCTATGGGGACCTCAGCATCAAAGACTTGACCAAGGCTCATTGACAATATGGCTTGACTCTACTTCAGGGAGCGGATTCAAGTCACTTAACTCTTATCGATCTGGATACTTTGGTGCTGCAATTAAGCTTCAACCTGGTTATACTGCAGGAGTCATAACATCCATCTATCTTTCAAATAACCAAGACCACCCAGGGAACCATGATGAAATTGACATTGAATTCCTTGGTACCACACCAGGTAAACCATATGTGTTGCAAACAAATGTATACATCAGAGGAAGTGGAGATGGGAATATTATAGGAAGAGAGATGAAATTTCATCTTTGGTTCGATCCTACACAAGATTTTCACAACTATGCTATTCTATGGAAACCCAGTGAGATAATATTTTTTGTGGATGATGTGCCCATAAGGAGGTATCCTAGGAAGAGTGATGCTACATACCCTACAAGACCAATGTATGTCTATGGATCAGTGTGGGATGCATCTTCATGGGCAACAGAGAATGGAAAATACAAAGCAGATTATAGATACCAACCCTTCATTGGTAGGTACAGAAACTTCAGATTACAAGGTTGCACCATTCAAAGCCCTAACTCTTGCAAACCACCCTCTACCTCACCCTATGGCTATGACAGCCTAAGCCCTCAGCAATTTGCATCCATGCAATGGGCCCAAAACAACTACTTGGTCTACAATTATTGTCATGACCCTAGAAGAGACCACACACTTATCCCAGAATGCTAG 906 0.4084 MPSSLFSFLYVAPLFSFLSLSSIISSSAQRPPSPGYYLTSKISTVNFDQGFRNLWGPQHQRLDQGSLTIWLDSTSGSGFKSLNSYRSGYFGAAIKLQPGYTAGVITSIYLSNNQDHPGNHDEIDIEFLGTTPGKPYVLQTNVYIRGSGDGNIIGREMKFHLWFDPTQDFHNYAILWKPSEIIFFVDDVPIRRYPRKSDATYPTRPMYVYGSVWDASSWATENGKYKADYRYQPFIGRYRNFRLQGCTIQSPNSCKPPSTSPYGYDSLSPQQFASMQWAQNNYLVYNYCHDPRRDHTLIPEC* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0402 301 Gene3D - 27 301 - -
Lan13g0402 301 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 18 301 - -
Lan13g0402 301 Pfam Glycosyl hydrolases family 16 48 230 IPR000757 GO:0004553|GO:0005975
Lan13g0402 301 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 265 301 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lan13g0402 301 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 18 301 IPR044791 GO:0004553
Lan13g0402 301 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 26 238 IPR000757 GO:0004553|GO:0005975
Lan13g0402 301 PIRSF EndGlu_transf 11 301 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lan13g0402 301 SUPERFAMILY Concanavalin A-like lectins/glucanases 46 301 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0402 Lan-Chr13 2757271 2760800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0402 17 301 Glycoside Hydrolase AT3G44990 68.990 1.72e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0402 K08235 - gmx:100781528 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1921 6 30159043 30161618 Lan13g0402 13 2757271 2760800 PCT
Lan13g0402 13 2757271 2760800 Lan6g1921 6 30159043 30161618 PCT