Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0290 ATGATAAAGCCTCAAGTATATCATGCCAACCAAACCCTTCATCACTTTCCACCGAGTCCATTCATTCATGGCATTCTTAGCAATACTAGGGCTTCAAATCTTCCACTATGGTCGAAGAAACAAGTTTATAGGGAAAAGCATAAGGGGTTCCTCTTTGTTCCTCGAAACATTCAACCTAACCCTACTTCTGCATCATCAGATACTAGTACTACTACTACTGCTGCTGATAAGAGCACAAAGAAGAAGAGTACTTTGAAGGTTAAAACCATAGTTAAGGTGAAAATAACTGAGTCTGGCTTCTTCTCAAGTCTAAGGTTAGATCGAGGAATTGATGATATAACAGATTTGCTTGGTAAATCTCTTCTCTTGGAGCTTGTTAGTTCTGACCTTGATCCTGATACGGGACTAGAAAAAGAGACAGTTAAAGCATATGCACACAAAGCAGGAGAAGGTGAAAAATCAGTTAAGTATGAAACTGATTTTGAAATCCCAAATGATTTTGGAGAGATTGGTGCAGTTCTTGTTGAAAATGAGCATCACAAAGAAATGTTCCTTGAATCCATCATTCTTAATGGTCTCCTACAAGGTCCTATTCATTTTGATTGTGCCTCTTGGGTTCACTCTAAGTTTGATAGTCCCTCCAAAAGAGTTTTCTTCACCAACAAGTGTTTCTTACCTTCAGATACACCAAGTGGTTTAACAAGATTAAGAGCAGAAGAATTGAGTAATCTAAGAGGAAATGGAAAAGGAGAACGCAAGAGCTTTGAAAGAATATATGATTACGATATATACAACGACATTGGAGATCCTGATAGAGGCCTTGATCTTCAAAGACCGCCTTTGGGAAGCAAAGGACTACCTTATCCTAGACGTTGCCGAACCGGACGTCCACATAGCGAAGCAGATCCATTGTCTGAAAAGAGAAATGGAAAATTTTATGTTCCAAGGGACGAATGCTTCTCCGAGGTGAAGGAGCTAACGTTTTCTACCAAGTCCTTACACTGTGTGTTGCTGATATTGCTTCCATCTCTGGGGAAAATTATCAGAGATGGGGACCTTCCATTCCCATTCTTTCATGAGATAGATTCACTTTTCAACACTGGGCTTGACCTGCCTCCTGATGAATTGGAGAAGGGATTCCTAGAAGCCATCATGCCGAGGCTTGTGAGAAACATTTCGGGTGATCAGGGAAACATGCTTCGCTTTGAGACTCCGGAGACAATGAACAGGGATAGGTTTTTCTGGTTTAGAGATGAAGAATTTGCTAGACAAACTATTGCTGGTCTCAACCCATGTAGCATAAAGTTGGTCAAAGAATGGCCATTGAGGAGTAAACTTGACCCAGAGAAATATGGTCCTGCAGAATCAGCAATTACGTCGGAAATTATCAATAAGGAGATTGGAGGCATACTTCCTGTAGAAAAGGCAATCAAAGAAAAAAAGCTGTTCATGCTAGACTACCATGACTTGCTTTTACCATATGTTAGCAAAATACGCAAACTTAAGGGGAAAACACTGTACGGTTCGCGCACTTTGTTCTTTCTAACCCCGGATGGAACACTGAGACCTCTTGCCATTGAGCTGACTAGACCACCCATGGATGGAAAGGGTCAATGGAAGCAAGTTTTCACACCTACTTGGCACTCAACCAGTGTTTGGCTCTGGAGAATTGCCAAGGCCCATGTTCTTTCACATGACTCTGGCTATCACCAACTTGTTAGTCATTGGTTAAGAACTCACTGTGTGACAGAGCCCTATGTTATTGCAACTAACAGGCAACTTAGTGTGATGCACCCCATATATAGATTGCTGCACCCTCATTTTCGTTACACGATAGAAATTAACGCTTTGGCACGAGAAGCACTTATTAATGCTGGTGGCACAATTGAGAGTGCATTTTCGCCTGGAAAGTATTCAATGGAGATTTGTTCTGCTGCCTATGATCTTGAATGGAGGTTTGACATGCAAGCTCTACCCGCGGACCTAATCATGAGGGGAATGGCTGAGAAAGATCCATTTGCTCCACATGGCTTAAGGCTAACAATTGAAGACTATCCCTATGCCAATGATGGACTCCTTCTATGGGACATTATAAAGCAATGGGTCACTGACTATGTCAACCATTATTACCCTGAACCAAGTCTTGTGGCTTTAGATGAGGAGCTCCATGCATGGTGGACAGAGATTAGAACAGTTGGTCATGCTGACAAAAAAGATGAACCATGGTGGCCAGTTCTTCAAACTCCCAAAGACCTTATTGGAATCCTTAATATAATAATATGGGTTACTTCTGGTTATCATGCAGCAGTGAACTTTGGACAATATGCATATGGTGGTTATTTCCCAAATAGGCCTACAATTGCAAGGACTAAAGTCCCTTCAGAGGACCCTACAGAAGAAGAATGGAAAAAGTTCATTGCAAAACCTGAAAGAACACTTTTGAAGTGCTTTCCTTCACAACTCCAAGCAACTACAGTCATGGCTGTATTGGATATACTCTCAACTCATTCGCCGGACGAGGAATACATAGGAGAGAAAATGGAACCATCATGGAGTGAAGATCCTGTGGTAAAGGATGCTTTTGAACAGTTTAGAGAGAGATTGAAGAAACTAGAACGATTGATTGATGCAAGGAATGAAAATGCAAACTTGAAGAACAGAAATGGAGCTGGCATTATGCCATATGAGCTTTTAAAGCCTTTCTCAAAACCAGGAGTCACTGGAATGGGGGTTCCATGTAGTATATCTATATAG 2754 0.4136 MIKPQVYHANQTLHHFPPSPFIHGILSNTRASNLPLWSKKQVYREKHKGFLFVPRNIQPNPTSASSDTSTTTTAADKSTKKKSTLKVKTIVKVKITESGFFSSLRLDRGIDDITDLLGKSLLLELVSSDLDPDTGLEKETVKAYAHKAGEGEKSVKYETDFEIPNDFGEIGAVLVENEHHKEMFLESIILNGLLQGPIHFDCASWVHSKFDSPSKRVFFTNKCFLPSDTPSGLTRLRAEELSNLRGNGKGERKSFERIYDYDIYNDIGDPDRGLDLQRPPLGSKGLPYPRRCRTGRPHSEADPLSEKRNGKFYVPRDECFSEVKELTFSTKSLHCVLLILLPSLGKIIRDGDLPFPFFHEIDSLFNTGLDLPPDELEKGFLEAIMPRLVRNISGDQGNMLRFETPETMNRDRFFWFRDEEFARQTIAGLNPCSIKLVKEWPLRSKLDPEKYGPAESAITSEIINKEIGGILPVEKAIKEKKLFMLDYHDLLLPYVSKIRKLKGKTLYGSRTLFFLTPDGTLRPLAIELTRPPMDGKGQWKQVFTPTWHSTSVWLWRIAKAHVLSHDSGYHQLVSHWLRTHCVTEPYVIATNRQLSVMHPIYRLLHPHFRYTIEINALAREALINAGGTIESAFSPGKYSMEICSAAYDLEWRFDMQALPADLIMRGMAEKDPFAPHGLRLTIEDYPYANDGLLLWDIIKQWVTDYVNHYYPEPSLVALDEELHAWWTEIRTVGHADKKDEPWWPVLQTPKDLIGILNIIIWVTSGYHAAVNFGQYAYGGYFPNRPTIARTKVPSEDPTEEEWKKFIAKPERTLLKCFPSQLQATTVMAVLDILSTHSPDEEYIGEKMEPSWSEDPVVKDAFEQFRERLKKLERLIDARNENANLKNRNGAGIMPYELLKPFSKPGVTGMGVPCSISI* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0290 917 ProSitePatterns Lipoxygenases iron-binding region signature 2. 597 607 IPR020834 GO:0016702|GO:0046872
Lan13g0290 917 SMART LH2_4 89 221 IPR001024 GO:0005515
Lan13g0290 917 Coils Coil 861 888 - -
Lan13g0290 917 ProSitePatterns Lipoxygenases iron-binding region signature 1. 570 584 IPR020833 GO:0016702|GO:0046872
Lan13g0290 917 PRINTS Plant lipoxygenase signature 190 208 IPR001246 GO:0016491
Lan13g0290 917 PRINTS Plant lipoxygenase signature 216 237 IPR001246 GO:0016491
Lan13g0290 917 PRINTS Plant lipoxygenase signature 255 271 IPR001246 GO:0016491
Lan13g0290 917 PRINTS Plant lipoxygenase signature 287 306 IPR001246 GO:0016491
Lan13g0290 917 PRINTS Plant lipoxygenase signature 352 373 IPR001246 GO:0016491
Lan13g0290 917 PRINTS Plant lipoxygenase signature 400 416 IPR001246 GO:0016491
Lan13g0290 917 PRINTS Plant lipoxygenase signature 439 458 IPR001246 GO:0016491
Lan13g0290 917 PRINTS Plant lipoxygenase signature 507 531 IPR001246 GO:0016491
Lan13g0290 917 PRINTS Plant lipoxygenase signature 830 844 IPR001246 GO:0016491
Lan13g0290 917 ProSiteProfiles PLAT domain profile. 100 220 IPR001024 GO:0005515
Lan13g0290 917 PANTHER LIPOXYGENASE 36 916 IPR000907 GO:0016702|GO:0046872
Lan13g0290 917 PRINTS Lipoxygenase signature 552 569 IPR013819 GO:0016702|GO:0046872
Lan13g0290 917 PRINTS Lipoxygenase signature 570 587 IPR013819 GO:0016702|GO:0046872
Lan13g0290 917 PRINTS Lipoxygenase signature 590 610 IPR013819 GO:0016702|GO:0046872
Lan13g0290 917 Gene3D - 225 323 - -
Lan13g0290 917 MobiDBLite consensus disorder prediction 54 79 - -
Lan13g0290 917 Gene3D PLAT/LH2 domain 69 224 - -
Lan13g0290 917 MobiDBLite consensus disorder prediction 286 307 - -
Lan13g0290 917 Gene3D - 344 431 IPR027433 -
Lan13g0290 917 Pfam PLAT/LH2 domain 154 219 IPR001024 GO:0005515
Lan13g0290 917 Gene3D - 432 566 - -
Lan13g0290 917 Gene3D - 567 915 - -
Lan13g0290 917 MobiDBLite consensus disorder prediction 56 78 - -
Lan13g0290 917 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 223 917 IPR013819 GO:0016702|GO:0046872
Lan13g0290 917 CDD PLAT_LH2 87 221 IPR042057 -
Lan13g0290 917 PANTHER LIPOXYGENASE 36 916 - -
Lan13g0290 917 MobiDBLite consensus disorder prediction 293 307 - -
Lan13g0290 917 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 87 223 IPR036392 GO:0005515
Lan13g0290 917 Pfam Lipoxygenase 232 900 IPR013819 GO:0016702|GO:0046872
Lan13g0290 917 SUPERFAMILY Lipoxigenase 225 917 IPR036226 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0290 Lan-Chr13 1867506 1876361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0290 163 917 Acyl Lipid Metabolism Gene Families AT3G45140 58.893 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0290 K00454 - gmx:100786646 1457.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0201 7 1235949 1241915 Lan13g0290 13 1867506 1876361 LSH