LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan13g0285	ATGTTCATCGTTTCCGCTACCCCTCTTTGTTGGTTTTGGTTTGGACCAAATCAAAATCAAAGAGTGTTCATGTCTCATACATCAACACCATGTTTCTCTGAACCTCTTCTTCCTTCAAATACCAACACACCCTCTTCCGTTGTTGAAGCTTCAAACTCTTCAATGTCCCAACTTCGTGTCTTTGTAAGGAGAAGAAATAAGAGACCCAAAATCACTATGCAAATTCAACAAAATGACAATCTTTCCTCAACCCACCACCACAAAAAAGTTGGTCTACCTGATATTGAAGAATTTGCATACAAAGGGGAAAATCAATTGACTCAATCTGGTAAATCGGCAGTGGGCTCAGACATGGCTCTGATGGAAAGTGAAGTTGATTCTTGTAGACTCAGTGGTGAATCACCTGCTCACTGGGAAAAGGTGCTTGAGGGGATTCGCAAAATGAGAGGCTCGGCAGATGCACCAGTAGACACTATGGGATGTGAGAAAGCTGGTGCTACTTTACCTCCTAAGGAAAGAAGATTTGCTGTCTTAGTATCGTCTCTTTTATCAAGCCAAACCAAGGATCATGTTAATCATGGAGCAATCCAACGTCTTCTTCAAAATGGTCTGCTTACTCCTGATGCATTGAACGATGCTGATGAAGAAACCATCAAAAAGTTGATATACCCTGTTGGGTTCTACACAAGAAAAGCCACTAATTTGAAAAAAATTGCAAATATTTGTCTCTTGAAGTATGATGGAGACATACCTAGTTCACTTGAGCAACTACTCTTACTCCCAGGAATAGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGGATGGAACAATGTCCAAGGGATTTGTGTGGATACTCATGTCCACCGCATTTGCAATCGGCTTGGATGGGTGTCAAGATTAGGCACAAAACAGAAAACTTCAACACCCGAAGAAACAAGAGAGGCACTGCAACGGTGGCTTCCAAAGGAAGAATGGGATCCAATAAATCCTCTTTTGGTGGGTTTTGGACAGACGATTTGTACTCCGCTACGACCTCGCTGCGCAGAATGCAGTGTAAGTGAGTTGTGCCCAGCGGCATTTAAAGACACCTCAGCCTCATCTTCCAAGTCCAAAAAGAATAGAGTCAACAAGAAGCTTTAA	1143	0.4226	MFIVSATPLCWFWFGPNQNQRVFMSHTSTPCFSEPLLPSNTNTPSSVVEASNSSMSQLRVFVRRRNKRPKITMQIQQNDNLSSTHHHKKVGLPDIEEFAYKGENQLTQSGKSAVGSDMALMESEVDSCRLSGESPAHWEKVLEGIRKMRGSADAPVDTMGCEKAGATLPPKERRFAVLVSSLLSSQTKDHVNHGAIQRLLQNGLLTPDALNDADEETIKKLIYPVGFYTRKATNLKKIANICLLKYDGDIPSSLEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTSTPEETREALQRWLPKEEWDPINPLLVGFGQTICTPLRPRCAECSVSELCPAAFKDTSASSSKSKKNRVNKKL*	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan13g0285	380	PANTHER	ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC	74	380	-	-
	Lan13g0285	380	SMART	endo3end	183	339	IPR003265	GO:0006284
	Lan13g0285	380	Hamap	Endonuclease III-like protein 1 [NTHL1].	134	363	IPR030841	GO:0003906\|GO:0005634\|GO:0006281\|GO:0006285\|GO:0019104
	Lan13g0285	380	CDD	ENDO3c	175	337	IPR003265	GO:0006284
	Lan13g0285	380	Pfam	HhH-GPD superfamily base excision DNA repair protein	179	322	IPR003265	GO:0006284
	Lan13g0285	380	ProSitePatterns	Endonuclease III family signature.	248	277	IPR004036	-
	Lan13g0285	380	PANTHER	ENDONUCLEASE III-LIKE PROTEIN 1	74	380	-	-
	Lan13g0285	380	Gene3D	-	273	363	IPR023170	-
	Lan13g0285	380	Pfam	Helix-hairpin-helix motif	245	273	IPR000445	GO:0003677
	Lan13g0285	380	Gene3D	Hypothetical protein; domain 2	161	272	-	-
	Lan13g0285	380	SUPERFAMILY	DNA-glycosylase	146	364	IPR011257	GO:0003824\|GO:0006281
	Lan13g0285	380	ProSitePatterns	Endonuclease III iron-sulfur binding region signature.	341	357	IPR004035	-
	Lan13g0285	380	SMART	ccc3	340	360	IPR003651	GO:0051539

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan13g0285	Lan-Chr13	1838963	1842800	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan13g0285	K10773		-	gmx:100818398	517.309

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan3g0258	3	1677344	1681414	Lan13g0285	13	1838963	1842800	PCT
	Lan13g0285	13	1838963	1842800	Lan3g0258	3	1677344	1681414	PCT