Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0271 ATGGCCGTCAACGATGCTGATCAATCAAACAAGTCTCACAGGATCCGTCAATCTGGCGCCAAAAAGGACAAGAAGAAGCTCAAGAAGAAGAAGCAGCAAGATTCTGATGATGATGATCAGAAACAGCTTAACCCTAAGGCATTCGCTTTTTCTTCCTCCAACAAAGCCAAGCGTTTGCAATCACGCGCCGTCGAGAAAGAGCAGCGCCGTCTTCACGTTCCCATCATTGACCGCTCTTATGGTGAACCTGCTCCTTTCGTCATCGTTGTGCAGGGTCCACCCCAGGTTGGGAAGTCACTGTTGATAAAGTCTCTGGTTAAACATTATACGAAACAAAATTTACCTGAAGTTCGAGGTCCAATTACTATTGTGTCAGGAAAGCAAAGACGACTGCAATTTGTGGAATGTCCAAATGATGTCAATGGCATGATAGATGCAGCAAAGTTTGCTGATCTAGCACTGCTTCTTGTAGATGGGAGTTATGGTTTCGAAATGGAAACCTTTGAATTCCTGAACATTTTGCAAGTTCATGGGTTCCCAAAGGTCATGGGGGTTCTTACTCATCTTGATCAGTTCAAGGATGCGAAAAAGTTGAGGAAAACAAAGCAACGCCTTAAACACCGGTTTTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGCCTTATTAATGGAAAGTACGTCAAGCGTGAAGTTCACAATCTTGCTCGATTCATTTCAGTGATGAAGTTTCAGCCTATATCTTGGCGAACATCACACCCATATGTTTTGGTAGATCGTCTCGAAGATGCCACTCCTCCCGAAAAAGTGCATGAAAATAAGAAATGTGACAGAAAAGTCATACTCTACGGTTATCTTAGAGGCTGTAATCTGAAAAAGGGGCATAAGGTGCACATAGCTGGAGTGGGTGATTACGGTTTACCTAGTATTACTGCTTTACCAGACCCTTGTCCTCTTCCATCTGCTGCAAAAAAGAAAGGACTGCGCGATAAGGAAAAGTTATTCTATGCTCCAATGTCTGGCCTTGGGGATCTTATGTATGACAAAGATGCTGTGTACATTAATATCAATGATCACCTTGTCCAGTTCTCAAAAGTTGATGATGAAAACTCAGCCATGACGAGCAAAGGAAAGGACAGAGATGTTGGCGAAGTTTTGGTGAAATCACTACAGAATACCAAGTACTCAATTAATGAAAAGCTGGAGAACAGCAGTATCAATCTTTTTGGTCAAAAGCCAAAAGTGTCATCAGAAGATCTAGCTGATACACAGGATGATATAGCTGGAAAAGATGGTGAAGATAATAATGAAGTGGATTCAGATGGTTCAGAATCATCTGATCAGGATGAAGCTGATGCCATGACAAAGAGTGAAGCTTCTGGTTCTGATGATGAAGATGGTGATGCATCTGATGGTAAAACTACCTCAGGAGACCACTTAAAAGAACATATTGAGTTTATTGATGGGAGACGAAGAAGAGGAGTGATCTTTGGAAGTGGTGTTAATCAAAACGAGCTGACGGATTTAGAAGAAGAGGATGGTGCTGCCAGTGATGATGTGGCATCTTCTGATTCAGAATCTTCAGAAGAAGCGGAGGAGGATGACAACAGTGACGATGACAAAGATGAAGATTATGACATGGGAAATGTCTCAAAGTGGAAAGAATCTTTGGCAGAAAGAACTCTCTCACGGAAAACTCCTAGTCTGATGCAACTTGTCTATGGAGAATCTACTGTTAATTCAACCTCTTTAGACAATGCAAATGATAATAGCGAAGATGATGAAAATGAAGAGGACTTTTTTAAGCCTATAGAAGAAGTTAAAAAGAACACAAGAGATGGATTGAACGATGGAATGACCAACGTTGATGATTGTTCCAAGTGTGCACATTTTGTGGATCAGAGATGGGATGAGAAAAATAATGAGGATATTCGCAACCGTTTTGTGACCGGAAATTTGGCAAAAGCTGCACTCAGAAACCCACTACCAAAATCTAATACTGAAGAGGAGAATGGTGATTTGTATGGTGATTTTGAAGATTTAGAAACAGGAGAAAAATTCGAGAATATTCAGACAGATGATGCTTTTGCTGCAAAAATACCCAAGGGAGATGATTTGGAAGCTGAGCAGCGTAGGCTTAAGAAGCTTGCTCTTCGGGCGAAATTTGATTCTCAATATGGTGATGACTCTGGGTCAGCAGAAGAAGATGCTGATAATGAAAATGAGGTCAAATTCCGTCGTGGTCAAACTAATGAAAGTAGCTATTTTGACAAGTTGAAGGAGGAGATTGAGCTTCGGAAACAAATGAATATAGCTGAACTCAATGAGCTTGATGAGGCTGCTCGAATAGAGACAGAGGGCTTCCGGACAGGAACATACCTTAGATTGGAGATTCATGATGTTCCTTGTGAGATGGTTGAATACTTTGATCCCTGCCATCCAGTATTGGTGGGAGGGGTTGGTCTCGGGGAGGAAAATGTTGGATACATGCAGGCCAGGCTAAAGCGGCACAGGTGGCACAAGAAAGTGCTAAAGACTAGAGATCCAATCATTGTTTCTGTTGGATGGAGGCGTTACCAGACAACACCAGTTTATGCTATTGAGGACATCAATGGAAGGCATCGAATGCTAAAATACACTCCAGAGCACATGCATTGCCTTGCTATGTTTTGGGGCCCACTTGCCCCACCCAACACTGGGATAGTTGCTGTTCAGAATTTATCGAACAATCAGGCAACATTTAGGATCACTGCAACTGCTGTTGTAGTTGAGTTTAAACATGAAACAAGAATAGTGAAGAAAATCAAATTGGTTGGTTATCCGTGCAAGGTATTCAAGAAAACAGCACTTATAAAGGATATGTTTACTTCAGATCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCGAACTGTCAGTGGGATCAGGGGGCAGGTCAAGAAGGCTGCGAAAGAAGAGTTAGGTAACCAACCAAAAAGGAAGGGTGGGCAAATCAAAGAAGGAATTGCTAGGTGCACTTTTGAAGACAAAATTCTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCCCAGTTCTACAATCCATTGACAACTGCATTGCAGCCTCGTCACAAGACTTGGCAAGGAATGAGAACTGTTGCAGAATTAAGAAGAGAAAACAATCTTTCTATACCTGTAAACAAAGATTCACTCTACAAGAAAATTGAAAGAAAGCAAAGGAAGTTCAATCCAGTGGTGATTCCTAAGTCTCTACAGGCAAGCCTTCCCTTTGAATCAAAACCCAAGGATATTCCCAAGCGGAAGAGGCCTTTACTTGAAGAAAGAAGGAAAAAGGGTGTTGTGATGGATCCTCGTGAGCGTAAAGTTCATGCTCTTGTTCAACAATACCAGTTAATTAGAAATGATAAGATGAAAAAGCGAAAGGTTAGTGAAGATAAAAAGAGGAAAGCACTTGAAGCAGAGAGAGCAAAAGAGGAGGAATTGTCAAAGAAGCGGCGGAGAGAGGAAAGACGAGTGAAATACAGAGCGGAAGACAAGAAGATGAAGAAAATTCGTAGAGCATAG 3588 0.4158 MAVNDADQSNKSHRIRQSGAKKDKKKLKKKKQQDSDDDDQKQLNPKAFAFSSSNKAKRLQSRAVEKEQRRLHVPIIDRSYGEPAPFVIVVQGPPQVGKSLLIKSLVKHYTKQNLPEVRGPITIVSGKQRRLQFVECPNDVNGMIDAAKFADLALLLVDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDQFKDAKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLINGKYVKREVHNLARFISVMKFQPISWRTSHPYVLVDRLEDATPPEKVHENKKCDRKVILYGYLRGCNLKKGHKVHIAGVGDYGLPSITALPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLMYDKDAVYININDHLVQFSKVDDENSAMTSKGKDRDVGEVLVKSLQNTKYSINEKLENSSINLFGQKPKVSSEDLADTQDDIAGKDGEDNNEVDSDGSESSDQDEADAMTKSEASGSDDEDGDASDGKTTSGDHLKEHIEFIDGRRRRGVIFGSGVNQNELTDLEEEDGAASDDVASSDSESSEEAEEDDNSDDDKDEDYDMGNVSKWKESLAERTLSRKTPSLMQLVYGESTVNSTSLDNANDNSEDDENEEDFFKPIEEVKKNTRDGLNDGMTNVDDCSKCAHFVDQRWDEKNNEDIRNRFVTGNLAKAALRNPLPKSNTEEENGDLYGDFEDLETGEKFENIQTDDAFAAKIPKGDDLEAEQRRLKKLALRAKFDSQYGDDSGSAEEDADNENEVKFRRGQTNESSYFDKLKEEIELRKQMNIAELNELDEAARIETEGFRTGTYLRLEIHDVPCEMVEYFDPCHPVLVGGVGLGEENVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDINGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQNLSNNQATFRITATAVVVEFKHETRIVKKIKLVGYPCKVFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEELGNQPKRKGGQIKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRHKTWQGMRTVAELRRENNLSIPVNKDSLYKKIERKQRKFNPVVIPKSLQASLPFESKPKDIPKRKRPLLEERRKKGVVMDPRERKVHALVQQYQLIRNDKMKKRKVSEDKKRKALEAERAKEEELSKKRRREERRVKYRAEDKKMKKIRRA* 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0271 1195 MobiDBLite consensus disorder prediction 421 439 - -
Lan13g0271 1195 Coils Coil 1142 1179 - -
Lan13g0271 1195 MobiDBLite consensus disorder prediction 29 43 - -
Lan13g0271 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 225 IPR027417 -
Lan13g0271 1195 MobiDBLite consensus disorder prediction 416 488 - -
Lan13g0271 1195 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 708 1029 IPR007034 -
Lan13g0271 1195 MobiDBLite consensus disorder prediction 509 547 - -
Lan13g0271 1195 MobiDBLite consensus disorder prediction 1 65 - -
Lan13g0271 1195 MobiDBLite consensus disorder prediction 1141 1184 - -
Lan13g0271 1195 SMART DUF663_2 702 1028 IPR007034 -
Lan13g0271 1195 Pfam AARP2CN (NUC121) domain 234 319 IPR012948 GO:0005634|GO:0042254
Lan13g0271 1195 SMART aarp2cn2 234 320 IPR012948 GO:0005634|GO:0042254
Lan13g0271 1195 PANTHER RIBOSOME BIOGENESIS PROTEIN 1 1188 IPR039761 GO:0042254
Lan13g0271 1195 PANTHER BNAC08G44910D PROTEIN 1 1188 - -
Lan13g0271 1195 MobiDBLite consensus disorder prediction 728 751 - -
Lan13g0271 1195 CDD BMS1 47 277 IPR037875 GO:0005525
Lan13g0271 1195 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 84 248 IPR030387 -
Lan13g0271 1195 MobiDBLite consensus disorder prediction 503 605 - -
Lan13g0271 1195 MobiDBLite consensus disorder prediction 1141 1195 - -
Lan13g0271 1195 MobiDBLite consensus disorder prediction 452 488 - -
Lan13g0271 1195 Gene3D - 86 249 IPR027417 -
Lan13g0271 1195 MobiDBLite consensus disorder prediction 565 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0271 Lan-Chr13 1716989 1724907 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0271 K14569 - gmx:100810906 1813.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1773 8 24372766 24380693 Lan13g0271 13 1716989 1724907 LSH