Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0266 ATGAAAAACACAAGAGTTGAAAGTGGCGCCATGATAGTAGAGCGAAACCCGTATCAAAGACAAAAACTTGGAGCCATTTTGAACTCTGATCCAGCCACCCTTTACACTCAAATCCACCATGACAACAACGATGAAATCTCAAACAAACGTCACAGCAACGCTTCCGCCGCCACGCCCGCGCGCAGCAGCAACAGTATCTCTCCCTTTTTGATGTCTCCATGGAATCAAGATACATCATCTCCTTACAACAAGTCTCCATGGTTGTTAACCTCTTCCACTGTCAACTTCTTCAACAACTACAACGACGATGAAAACAACAACAACGACGATTTGGAGAACGGGCTCATTGGGTCTCTCGTTCGAGAAGAGGGACACATATACTCGTTGGCGGTTTCGGGGGATTTGTTGTACACTGGTTCTGATAGTAAGAACATTAGGGTTTGGAAGCATATGAAGGACTACACTGGCTTCAAATCACGCAGTGGCCTGGTCAAAACCATTGTGGTTTCCGGTGAGAAAATCTTCACTGGTCATCAAGATGGTAAAATAAGGGTTTGGAAGGGTTCAAATAAGAATCCTAGCTGCTACAAACGCGTTGGAAGCTTGCCTAAATTCAAAGACTACGTCAAGAGTTCAATGAATCCCAATAACTACATCGAAATCAGGCCACATAGAAACGCGGTAAAGGTGAAGCACTTCGACGCCGTTTCGAGCCTGAGCTTGGACGAGGAAGAAGGTTTTTTGTACTCAGGTTCGTGGGATAAAACTCTCAAGGTTTGGCGCGTATCGGATTCAAAGTGCGTTGAGTCAATCCAAGCCCACGACGATGCGGTTAACGCGGTTGTGTCATCGTTGGGTGGATACGTGTTAACTGGTTCTGCAGATGGAACGGTGAAGATGTGGAAGAGGGAAATGAAGGGGAAGAAAACGAAACACGTTTTGGATAGGATTCTGTTGAAGCAAGAAAACGCTGTAACTTCTTTAGCAGTGAACCATTTATCAACGGTGGTTTATTGCGGTTCATCTGACGGAATTGTGAACTACTGGGAGCGTGACGGTAAAAACAACGGCCTCAACCACGGCGGCGTTTTGAAGGGGCACAAGCTGGCGGTGCTGTGTCTCGCGGCGGCCGGGAGCCTAGTTTTCAGCGGCTCCGCTGATAAGAAAGTTTGCGTTTGGAAGCGAGAAGATAGTGGGGCCCACTTGTGCCTTTCGGTTCTGACGGGCCACATGGGCCCAGTTAAGTGCATCGCGGTTGAGGAAGAACCTCACAACGGCGTTCAACGGTGGAAAGTTTATACTGGGAGTTTAGATAAGTCCGTGAAGGTGTGGCGCGTGAGTGAACACGTGCCTGAGTTGAAGATTATAGATAGTAGCCCTACTTATGATTCTTCCCCTCGTGCATCGAACTACTCTTCACTCGCAAACTATGCAAGAATATAA 1443 0.4733 MKNTRVESGAMIVERNPYQRQKLGAILNSDPATLYTQIHHDNNDEISNKRHSNASAATPARSSNSISPFLMSPWNQDTSSPYNKSPWLLTSSTVNFFNNYNDDENNNNDDLENGLIGSLVREEGHIYSLAVSGDLLYTGSDSKNIRVWKHMKDYTGFKSRSGLVKTIVVSGEKIFTGHQDGKIRVWKGSNKNPSCYKRVGSLPKFKDYVKSSMNPNNYIEIRPHRNAVKVKHFDAVSSLSLDEEEGFLYSGSWDKTLKVWRVSDSKCVESIQAHDDAVNAVVSSLGGYVLTGSADGTVKMWKREMKGKKTKHVLDRILLKQENAVTSLAVNHLSTVVYCGSSDGIVNYWERDGKNNGLNHGGVLKGHKLAVLCLAAAGSLVFSGSADKKVCVWKREDSGAHLCLSVLTGHMGPVKCIAVEEEPHNGVQRWKVYTGSLDKSVKVWRVSEHVPELKIIDSSPTYDSSPRASNYSSLANYARI* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0266 480 Pfam Nucleoporin Nup120/160 119 274 - -
Lan13g0266 480 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 15 458 - -
Lan13g0266 480 SUPERFAMILY WD40 repeat-like 118 451 IPR036322 GO:0005515
Lan13g0266 480 CDD WD40 123 445 - -
Lan13g0266 480 Pfam WD domain, G-beta repeat 362 394 IPR001680 GO:0005515
Lan13g0266 480 Pfam WD domain, G-beta repeat 403 444 IPR001680 GO:0005515
Lan13g0266 480 Gene3D - 222 459 IPR015943 GO:0005515
Lan13g0266 480 Gene3D - 79 221 IPR015943 GO:0005515
Lan13g0266 480 MobiDBLite consensus disorder prediction 49 64 - -
Lan13g0266 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Lan13g0266 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 364 394 IPR001680 GO:0005515
Lan13g0266 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 266 - -
Lan13g0266 480 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Lan13g0266 480 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Lan13g0266 480 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Lan13g0266 480 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 15 458 IPR045182 -
Lan13g0266 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 302 IPR001680 GO:0005515
Lan13g0266 480 MobiDBLite consensus disorder prediction 44 64 - -
Lan13g0266 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 302 - -
Lan13g0266 480 SMART WD40_4 264 302 IPR001680 GO:0005515
Lan13g0266 480 SMART WD40_4 150 187 IPR001680 GO:0005515
Lan13g0266 480 SMART WD40_4 400 445 IPR001680 GO:0005515
Lan13g0266 480 SMART WD40_4 223 261 IPR001680 GO:0005515
Lan13g0266 480 SMART WD40_4 357 394 IPR001680 GO:0005515
Lan13g0266 480 SMART WD40_4 311 350 IPR001680 GO:0005515
Lan13g0266 480 SMART WD40_4 112 149 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0266 Lan-Chr13 1676614 1678547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0266 170 446 Acyl Lipid Metabolism Gene Families AT3G18860 27.465 2.83e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0266 - - lang:109355444 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0176 7 1080256 1082128 Lan13g0266 13 1676614 1678547 LSH