Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0251 ATGGAGATCGATTTCAATGAATACCGATTACGCTGTGAACTCCATGGCCACGAAGACGATGTTCGTGGAATATGCGTTTGCGGCAACGACGCCATAGCGACGTCGTCCAGGGACCGAACGATTAGGTTTTGGTCTCTTGATTCTTCCGATAAGCGCAAGTTAGTGTGTTCCAAAATTCTGTTAGGGCACTCTAGTTTTGTGGGACCCTTGGTATGGATTTCACCGAACCAAGAGTTCCCACAAGGTGGGATTGTATCTGGTGGAATGGATACACTTGTGTTGGTATGGGATTTGAAAACTGGAGAGAAGGTTCACACACTCAAGGGACATCAATTGCAGGTTACTGCCATTGCATTGGATGATAATGGAGATATTATATCTTCTTCTGTTGATTGCACCTTGAGACTGTGGAGGAATGGGCAATCTGTAGAGACATGGGAGGCTCATAAGGCACCAGTCCAGGCAGTTGTAAAGCTACCCTCCGGCGAGATTGTTACAGGTTCAAGTGACACTACTTTAAAGCTTTGGAGAGGGAAAACTTGTTTACACACTTTTGCTGGACATGCAGATACAGTTCGAGGCTTGGCTGCAATGTCTGGTCTTGGAATCTTATCTGCGTCACATGATGGCTCTCTCAGATTATGGGCAGTAAGTGGTGAAGTGTTAATGGAGATGGTTGGTCATACTGCAATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGCAGCGAAGATCGTTTCGCAAAAATATGGAAAGATGGAGTTTGTGTTCAGAGCATAGAACATCCTGGTTGTGTATGGGATGCAAAATTCCTGGAAAATGGGGATATCGTGACAGCATGTTCGGATGGTACTGTACGCATTTGGACTGTACATCAGGATACTGTTGCTGACCAGCTAGAGCTTGATTTATATACTTCACAACTCTCTCAATACAAAGCTAGTAGAAAGAGGGTTGGAGGATTGAAATTGGAAGAGTTACCTGGGCTGGATTCACTGAAGATCCCAGGAACTAGTGATGGCCAAACAAAAATAGTTAGGGAGGGGGATAACGGAGTGGCATATGCATGGAACCTTCCAGAACAGAAGTGGGATAAAATTGGGGAAGTTGTTGATGGACCGGAGGAGTCAAGTCGTCCTTTCCATGATGGTGCTCAGTATGACTATGTGTTTGATGTGGATATTGGAGATGGTATGCCTACCCGTAAGTTGCCATACAACCGATCAGATAATCCATATGACGTTGCTGACAAATGGCTCCTCAAGGAGAGTCTCCCTCTTTCCTTCCGTGAGCAAATCGTACAGTTCATACTTCAAAATACTGGACAAAAGGATATTACTTTTAATGCTTCATTTCGTGATCCCTATACTGGCTCCAACGCTTACATACCAGGACAATCTTCACAAGTGTCTGGTATTTCTGCAAAACCTACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTTGATGCAGCTCAGTTTGATGGGATCCTTAAAAAGATTACTGAGTTCAATAATGCTCTACTATCTGACCAGGAAAAGCAGAACTTGTCCTTGACTGAGCCTGATGTTTCCAGACTGGGGTCCATTGTTAAAACTCTGAAAGATACTTCATATTACCATTCTAGTAAATTTGCAGACTCTGATATTGCCTTGTTACTGAATTTACTTCAGTCATGGCCACTCGGAGTGATATTTCCTGTCATTGATATTTTAAGGATGATAGTTCTTCATCCAGATGGGGCTACTAAACTTCACAAGCATTTTGAAACCAAAAATGATATACTAATGGAAGTGATTAAGAAAGTAACAGTACATCCAGCAATTCCTGCAAATTTGTTGACCAGCATCCGTACTATAACTAATCTCTTCAAGAATTCGTGCTACTTCAACTGGTTGCAAAAACACTGCAGTGAGATTCTCGATGCTTTCTCAAGTTGTAGTTCATCGTCAAACAAAAATTTGCAGTTGTCCTATTCTACCTTGATACTCAATTACACTGTGCTATTAATTGAATTGAAGGATCAAGAAGGACAATCTCAAGTTTTATCAGCAGCACTTGAGATTGTTGAAAATGAAAATGTAGAAGGTGATTCCAAATTCCGTGCATTAGTTGCTATTGGATCATTGATGCTTGAGGGTCTTGTTAAAAAAATAGCACTGGACTTTGATGTTTTGAACGTTGCAAAAGCAGCCAAGGGTTCTAAGGAAGCCAAGATAGCTGAAGTTGGATCTGACATTGAGCTGTTAGCAAAGCAGAGTTGA 2280 0.418 MEIDFNEYRLRCELHGHEDDVRGICVCGNDAIATSSRDRTIRFWSLDSSDKRKLVCSKILLGHSSFVGPLVWISPNQEFPQGGIVSGGMDTLVLVWDLKTGEKVHTLKGHQLQVTAIALDDNGDIISSSVDCTLRLWRNGQSVETWEAHKAPVQAVVKLPSGEIVTGSSDTTLKLWRGKTCLHTFAGHADTVRGLAAMSGLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGTVRIWTVHQDTVADQLELDLYTSQLSQYKASRKRVGGLKLEELPGLDSLKIPGTSDGQTKIVREGDNGVAYAWNLPEQKWDKIGEVVDGPEESSRPFHDGAQYDYVFDVDIGDGMPTRKLPYNRSDNPYDVADKWLLKESLPLSFREQIVQFILQNTGQKDITFNASFRDPYTGSNAYIPGQSSQVSGISAKPTFKHIPKKGMLVFDAAQFDGILKKITEFNNALLSDQEKQNLSLTEPDVSRLGSIVKTLKDTSYYHSSKFADSDIALLLNLLQSWPLGVIFPVIDILRMIVLHPDGATKLHKHFETKNDILMEVIKKVTVHPAIPANLLTSIRTITNLFKNSCYFNWLQKHCSEILDAFSSCSSSSNKNLQLSYSTLILNYTVLLIELKDQEGQSQVLSAALEIVENENVEGDSKFRALVAIGSLMLEGLVKKIALDFDVLNVAKAAKGSKEAKIAEVGSDIELLAKQS* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0251 759 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 137 IPR001680 GO:0005515
Lan13g0251 759 SUPERFAMILY ARM repeat 532 717 IPR016024 -
Lan13g0251 759 Gene3D - 484 755 IPR011989 -
Lan13g0251 759 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 4 755 - -
Lan13g0251 759 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Lan13g0251 759 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Lan13g0251 759 PRINTS G protein beta WD-40 repeat signature 203 217 IPR020472 -
Lan13g0251 759 CDD WD40 10 293 - -
Lan13g0251 759 Gene3D - 378 453 IPR038122 -
Lan13g0251 759 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 54 IPR001680 GO:0005515
Lan13g0251 759 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 256 IPR001680 GO:0005515
Lan13g0251 759 Pfam WD domain, G-beta repeat 180 215 IPR001680 GO:0005515
Lan13g0251 759 Pfam WD domain, G-beta repeat 259 293 IPR001680 GO:0005515
Lan13g0251 759 Pfam WD domain, G-beta repeat 141 176 IPR001680 GO:0005515
Lan13g0251 759 Pfam WD domain, G-beta repeat 101 137 IPR001680 GO:0005515
Lan13g0251 759 Pfam WD domain, G-beta repeat 13 45 IPR001680 GO:0005515
Lan13g0251 759 Pfam WD domain, G-beta repeat 221 256 IPR001680 GO:0005515
Lan13g0251 759 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 48 - -
Lan13g0251 759 Pfam PFU (PLAA family ubiquitin binding) 340 448 IPR015155 -
Lan13g0251 759 Gene3D - 4 311 IPR015943 GO:0005515
Lan13g0251 759 SMART WD40_4 7 45 IPR001680 GO:0005515
Lan13g0251 759 SMART WD40_4 218 256 IPR001680 GO:0005515
Lan13g0251 759 SMART WD40_4 53 97 IPR001680 GO:0005515
Lan13g0251 759 SMART WD40_4 257 294 IPR001680 GO:0005515
Lan13g0251 759 SMART WD40_4 139 177 IPR001680 GO:0005515
Lan13g0251 759 SMART WD40_4 178 216 IPR001680 GO:0005515
Lan13g0251 759 SMART WD40_4 100 138 IPR001680 GO:0005515
Lan13g0251 759 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 106 IPR001680 GO:0005515
Lan13g0251 759 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 4 755 - -
Lan13g0251 759 ProSitePatterns Trp-Asp (WD) repeats signature. 84 98 IPR019775 -
Lan13g0251 759 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 176 IPR001680 GO:0005515
Lan13g0251 759 ProSiteProfiles PUL domain profile. 484 755 IPR013535 -
Lan13g0251 759 ProSiteProfiles PFU domain profile. 360 455 IPR015155 -
Lan13g0251 759 Pfam PUL domain 486 751 IPR013535 -
Lan13g0251 759 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 215 IPR001680 GO:0005515
Lan13g0251 759 Coils Coil 678 698 - -
Lan13g0251 759 SUPERFAMILY WD40 repeat-like 5 307 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0251 Lan-Chr13 1583977 1596202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0251 1 758 Acyl Lipid Metabolism Gene Families AT3G18860 71.146 0.0 1163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0251 K14018 - gmx:100816481 1318.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0251 13 1583977 1596202 Lan13g0251 13 1583977 1596202 ECH
Lan7g0165 7 1004718 1015967 Lan13g0251 13 1583977 1596202 LSH