Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0242 ATGTCTCAGCCACTCGTGAAGAAGGACGATGACCGCGACGATGAAGCTGAGTATTCCCCATTTATGGGAATTGAAAAGGGGTCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCGCAACTAGACGCTAGGAGATGCTCACAGGTTATCACAAAACTTTTATACCTCCTGAATCAGGGAGAGTCATTTACAAAGGTCGAAGCCACAGAAGTGTTCTTTTCTGTGACAAAGCTTTTCCAGTCTCGTGATCTTGGGTTAAGGAGAATGGTTTATTTGATTATAAAGGAACTCTCCCCCTCTGCAGATGAGGTTATTATCGTCACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAACGCCATTCGTGTGCTATGTCGTATCACGGATGGAACCCTCCTTACCCAAATTGAGCGGTATTTGAAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAAGTGCAGCCCTCGTTAGTGGCATTCATCTACTCCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCTCTTGTACAATTTCATGCACTGGCTTTGCTACATCAGATACGGCAAAATGATCGATTAGCTGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAACTGTTCGCTCACCTTTGGCCCAATGCCTTTTGATCCGTTATACAAGTCAGGTCATTCGCGAGTCAGGAAATAATACACAATCAGGGGACCGCCCCTTCTATGATTATCTTGAGAGTTGTCTTCGTCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAAGGCAATTACAGAGCTCAATGGAGTAACAAGCCGAGAATTAACTCCAGCAATTACTGTACTTCAGCTCTTCTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGGCACACCCGATGGCAGTCACTAACTGCAACATCGATATGGAAAGTTTAATCTCGGACCAAAACAGAAGCATTGCCACACTTGCTATTACTACTCTCTTGAAGACAGGAAATGAATCAAGTGTGGACCGTCTTATGAAGCAGATAACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTCGTTGTTGAAGCAATAAGATCATTGTGTTTGAAGTTCCCATTAAAATATAGATCTCTGATGAACTTCTTGAGTAACATTCTCAGGGAAGAAGGTGGATTTGATTACAAGAAAGCAATTGTAGATTCGATTGTTATTCTTATTAGAGACATCCCTGATGCAAAGGAAAGTGGTCTGCTTCATCTCTGTGAATTCATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATACTACACTTCCTGGGAGTTGAAGGGCCAAAAACATCAGACCCCAGCAAATTTATTCGTTATATTTATAACAGAGTGCATCTTGAGAATGCAACTGTTAGGGCTAGTGCTGTGAGCACACTAGCAAAGTTTGGTGCTGCAGTTGATGAATTGAAGCCTCGCATATTTGTTCTCCTAAGACGATGTCTTTTTGACAATGATGATGAGGTTCGTGATAGGGCAACACTTTATCTGAACACACTTGGAGGCGATGGTTCAGTTGTCGAGAGTGATAAAGATGTGAAAGATTTCCTCTTTGGTTCATTTGAAATCCCACTTGTCAATCTAGAGACTAGTTTGAAAAATTATGAGCCTTCAGAAGAGGCTTTTGACATTATTTCGGTGCCCAAGGAGGTCAAGTCTCAGCCTCTTTTAGAGAAGAAAACCCAAGGTAAAAAGCCAACTGGTTTGGGTGCTCCTCCTAGTGGCCCCTCATCTACTGCAGATGCATATGAAAGGCTGCTGCTGTCCATTCCTGAGTTTACAAGCTTTGGAAAGCTTTTTAAGTCCTCAGCACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTCAATGTTGTTAAACACATTTTTGATAGGCATGTTGTGTTTCAGTACAACTGCACAAACACAATACCAGAACAATTATTGGAAGATGTTATTGTAATTGTGGATGCATCAGAAGCAGAGGAATTTTCTGAGGTTTTCGCCAAGCCTCTCAGAGCTCTTCCTTATGATTCACCCGGACAGACTTTTGTGGCTTTTGAGAAGTCCGAGGGCTTGCCAACAGCTGGGAAATTTTCTAACACACTGAAATTTATTGTTAAGGAGGTTGACCCAACCACTGGCGAGGCAGATGATGACGGTGTTGAAGATGAATACCAGCTTGAGGATCTGGAGGTTGTTGCAGCAGATTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAACGCGTGGGAAAGTATGGGCCCTGATTCTGAACGAGTGGATGAATATGGTCTCGGCCCAAGGGAGAGCTTGGCTGAAGCTGTAAATACAGTCATCAACCTTCTTGGATTGCAGCCTTGTGAGGGCACAGAAGTTGTTCCACCCAATTCAAGGTCACACACATGCTTAATGTCAGGTGTATTCATAGGGAATGTGAAGGTGCTTGTGCGGCTATCTTTTGGACTTGACGGTCCGAAGGATGTTGCAATGAAACTGGCTGTCAGATCCGATGATGAAGCTGTCAGCGATGCCATTCATGAGATTGTGGCTAGTGGCTAG 2664 0.4313 MSQPLVKKDDDRDDEAEYSPFMGIEKGSVLQEARVFNDPQLDARRCSQVITKLLYLLNQGESFTKVEATEVFFSVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIRESGNNTQSGDRPFYDYLESCLRHKSEMVIFEAAKAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMAHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDPSKFIRYIYNRVHLENATVRASAVSTLAKFGAAVDELKPRIFVLLRRCLFDNDDEVRDRATLYLNTLGGDGSVVESDKDVKDFLFGSFEIPLVNLETSLKNYEPSEEAFDIISVPKEVKSQPLLEKKTQGKKPTGLGAPPSGPSSTADAYERLLLSIPEFTSFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVIVIVDASEAEEFSEVFAKPLRALPYDSPGQTFVAFEKSEGLPTAGKFSNTLKFIVKEVDPTTGEADDDGVEDEYQLEDLEVVAADYILKVGVSNFRNAWESMGPDSERVDEYGLGPRESLAEAVNTVINLLGLQPCEGTEVVPPNSRSHTCLMSGVFIGNVKVLVRLSFGLDGPKDVAMKLAVRSDDEAVSDAIHEIVASG* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0242 887 Gene3D - 769 885 IPR012295 -
Lan13g0242 887 Gene3D - 23 316 IPR011989 -
Lan13g0242 887 SUPERFAMILY Clathrin adaptor appendage domain 617 771 IPR013041 -
Lan13g0242 887 PANTHER COATOMER SUBUNIT GAMMA 1 887 - -
Lan13g0242 887 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 772 884 IPR009028 GO:0006886|GO:0016192|GO:0030117
Lan13g0242 887 Gene3D - 336 551 IPR011989 -
Lan13g0242 887 Gene3D Coatomer, gamma subunit, appendage domain 616 768 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lan13g0242 887 Pfam Adaptin N terminal region 29 540 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lan13g0242 887 PIRSF Gamma-COP 7 885 IPR017106 -
Lan13g0242 887 SUPERFAMILY ARM repeat 32 564 IPR016024 -
Lan13g0242 887 MobiDBLite consensus disorder prediction 596 618 - -
Lan13g0242 887 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 770 884 IPR032154 -
Lan13g0242 887 Pfam Coatomer gamma subunit appendage platform subdomain 622 767 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lan13g0242 887 PANTHER COATOMER SUBUNIT GAMMA 1 887 IPR017106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0242 Lan-Chr13 1498102 1504429 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0242 K17267 - gmx:100789362 1641.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0242 13 1498102 1504429 Lan13g0242 13 1498102 1504429 ECH
Lan7g0157 7 953413 959526 Lan13g0242 13 1498102 1504429 LSH
Lan8g1785 8 24451300 24457514 Lan13g0242 13 1498102 1504429 LSH