Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0214 ATGCTTGTGCTGTTTGAGACACCCGCAGGGTTTGCCCTTTTTAAGGTTCTGAATGAAGGAAAGCTTTCCAAAGTTGAGGACTTGTGGAATGATTTTTCAAGTGTAGATTCTGCCAGACAGGTGGTCAAGTTGAAAGCTTTCTCTAAGTTTGAGAACACTTCTGAAGCTCTAGAGGCAGCTACTTTGCTGATTGAGGGGAAAGCTAGCAAGGGTCTACGCAAGTTCTTGCGTGTTCATTGTGAAAATGAAACTCTAGCCGTGGCTGATTCAAAGCTTGGGAATTTGATTAAGGAGAAACTGAAAATTGATTGTCTTCACAACAATGCCGTGATGGAGTTGATAAGAGGTGTTAGAAATCATTTAGCGGAACTCATATCTGGTCTAGCTGTACAAGATATGGCCCCAATGAGCTTGGGTTTATCTCACAGCTTATCCAGATACAAGCTCAAGTTTAGTGCAGATAAGGTGGATACCATGATTGTCCAGGCTATTGGTTTACTTGATGATCTTGATAAAGAGTTGAATACATATGCCATGAGGGTTCGAGAATGGTATGGTTGGCATTTTCCAGAGCTTACTAAAATAATACAGGATAACATCCATTATGCAAAATCAGTCAAGTTAATGGGTGATCGCATTAATGCAGCAGCACTTGATTTCTCCGAGATTTTGCCAGAGGAGGTTGAGGCGCAACTGAAGGAGGCTTCTGTGATTTCCATGGGAACTGAAATTGGTGAGCTTGATTTGGCAAACATTAGAGAACTCTGTGACCAGGTCTTGTCTCTTTCAGAGTACCGAGCACAGCTCTTTGATTATTTAAAAAGTAGGATGAACACCATTGCACCCAATTTGACTGCCCTGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCCCATGGAGGTAGCTTAATGAATCTTGCAAAGCAGCCTGGTAGTACTGTGCAGATTCTTGGTGCTGAGAAGGCTCTCTTTAGGGCACTGAAGACTAAGCATGCTACTCCCAAGTATGGTCTTATTTACCATGCATCCTTGATTGGCCAGGCAGCTCCAAAGCTTAAGGGGAAGATTTCTCGGTCACTTGCTGCTAAGGCAGCATTGGCTATCAGGTGTGATGCTCTCGGAGACCCCCAGGACAACTCTATGGGATTGGAGAACAGACTCAAGCTTGAAGCACGTTTGAGGAGCCTTGAAGGAAAAGAGTTAGGTCGTTTTGCTGGTTCTGCCAAAGGGAAGCCCTTGATAGAGTCATATGACAAGGATAAAAAGAAAGGAAGTGGCGGACTAATTACTCCGGCTAAGACATATAATCCTTCAGCTGATTCTGTTATTGGGCAATTGACTAATTCTGCAATGGATGAAGATACACCAGTGCCTTCTATCACCGATAAGAAGAAAGAAAAGAAAGAAAAGAAAGAGAAGAAGAAAAAGGGGGAGGAGACAAATGAAGAGGATGCAACTGTACAAGCTGATGGGGAGGAACCTGAACCTGAAGTTGTGAAGAAGGAAAAGAAGAAAAAGAAGAAGGATTCTGCTGACAATGCTGAGGTGCAGAACGGGAATAATTTGGATGCAGGAGAAAAGAAGAAAAAGAGGAAAAAGCATGCAGAACCGGAAGAATCACCTGAATTGCCTAGCAAAAAGAAAGGGAAAAAGAAGAAAAATGAGAGCTGA 1671 0.4321 MLVLFETPAGFALFKVLNEGKLSKVEDLWNDFSSVDSARQVVKLKAFSKFENTSEALEAATLLIEGKASKGLRKFLRVHCENETLAVADSKLGNLIKEKLKIDCLHNNAVMELIRGVRNHLAELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNIHYAKSVKLMGDRINAAALDFSEILPEEVEAQLKEASVISMGTEIGELDLANIRELCDQVLSLSEYRAQLFDYLKSRMNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKLKGKISRSLAAKAALAIRCDALGDPQDNSMGLENRLKLEARLRSLEGKELGRFAGSAKGKPLIESYDKDKKKGSGGLITPAKTYNPSADSVIGQLTNSAMDEDTPVPSITDKKKEKKEKKEKKKKGEETNEEDATVQADGEEPEPEVVKKEKKKKKKDSADNAEVQNGNNLDAGEKKKKRKKHAEPEESPELPSKKKGKKKKNES* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0214 556 Coils Coil 460 483 - -
Lan13g0214 556 MobiDBLite consensus disorder prediction 431 455 - -
Lan13g0214 556 MobiDBLite consensus disorder prediction 493 513 - -
Lan13g0214 556 Pfam NOP5NT (NUC127) domain 2 66 IPR012974 -
Lan13g0214 556 Pfam snoRNA binding domain, fibrillarin 166 394 IPR002687 -
Lan13g0214 556 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 554 IPR045056 GO:0030515|GO:0031428|GO:0032040
Lan13g0214 556 MobiDBLite consensus disorder prediction 457 483 - -
Lan13g0214 556 Gene3D - 129 284 - -
Lan13g0214 556 PANTHER PROTEIN NOP56, PUTATIVE-RELATED 1 554 - -
Lan13g0214 556 Gene3D Nop domain 285 397 IPR042239 -
Lan13g0214 556 MobiDBLite consensus disorder prediction 522 556 - -
Lan13g0214 556 MobiDBLite consensus disorder prediction 415 556 - -
Lan13g0214 556 SMART NOSIC_2 159 211 IPR012976 -
Lan13g0214 556 SUPERFAMILY Nop domain 153 397 IPR036070 -
Lan13g0214 556 ProSiteProfiles Nop domain profile. 280 398 IPR002687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0214 Lan-Chr13 1341316 1345203 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0214 K14565 - gmx:100775301 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0140 7 843289 847052 Lan13g0214 13 1341316 1345203 LSH
Lan8g1803 8 24565637 24569343 Lan13g0214 13 1341316 1345203 LSH