Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0203 ATGGATGCAATCAGAAAACAAGCCTCCAAGCTTCGAGAACAAGTCGCTCGTCAACAACAGGCTGTTCTGAAACAATTTGGTGGTGGAGTATATGGAGGTTCAGATAATGTGGTTATCGATGATGTAGAACTTCATCTATATCAGAAACTTGAGAAACTTTACACATCAACACGTGCTGCAAAGCATTATCAAAGGGATATTGTCCGTGGTGTTGAAGGTTATATTGTTACCGGGTCCAAGCAAGTTGAAATTGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCAGAAAATACATGTACCAGTGGCAATACATTGTCCAGAGCTGCACTAAGTTATGCACGGGCACGTGCTCAAATGGAGAAGGAGCGTGGAAACTTACTAAAAGCTCTGGGTACACAGGTTGCAGAGCCCTTAAGAGCAATGGTGGTGGGAGCTCCATTGGAAGATGCTCGGCATCTAGCCCAACGTTATGACCGAATGCGACAGGAAGCTGAAGCCCTGGGTACCGAAGTTTCCAAACGTCAGGCGAAAGTAAGAGAAACACCAGGCAATGCTGATAATGCTATGAAATTAGAAGCAGCTGAAGCAAAGCTGCAAGATATGAAGAAAAACATGGGCGTGTTAGGGAAAGAAGCGGCTGCAGCATTGGCTGCTGTTGAAGCACAGCAACAGAGGTTAACCCTTCAGCGCCTTATAGCTACGGTTGAAGTGGAGCGTGCCTATCACCAGGTAGTCCTCCAGATACTTGATCAGCTTGAGGGAGAGATGACGTCAGAACGACAACGAATTGAAGCCCCTCCTACTCCTAGTGTTGATAACAGCATGCCACCACCCCCGCCATATGAAGAAGTGAATGGTGTCTATGCTTCTCAGTCACATAATGGATCAACAGATAACATGGGTTACTTCTTAGGAGAGGTTTTATTTCCATACTCTGCTGTATCTGAAGTGGAGCTGAATCTATCAGTTGGTGATTATGTTGTTGTCCGAAAGGTTCATACTTTGGTGACAAATAAGGGATGGGCCGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCACTAAGTTACATTGAAAGAAGGGAGCATGTTCTTGCTAGCAAGGTGATTGAGGCGTTTTGA 1128 0.453 MDAIRKQASKLREQVARQQQAVLKQFGGGVYGGSDNVVIDDVELHLYQKLEKLYTSTRAAKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGNTLSRAALSYARARAQMEKERGNLLKALGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQEAEALGTEVSKRQAKVRETPGNADNAMKLEAAEAKLQDMKKNMGVLGKEAAAALAAVEAQQQRLTLQRLIATVEVERAYHQVVLQILDQLEGEMTSERQRIEAPPTPSVDNSMPPPPPYEEVNGVYASQSHNGSTDNMGYFLGEVLFPYSAVSEVELNLSVGDYVVVRKVHTLVTNKGWAEGECKGKAGWFPLSYIERREHVLASKVIEAF* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0203 375 SMART SH3_2 305 364 IPR001452 GO:0005515
Lan13g0203 375 Pfam Variant SH3 domain 309 361 IPR001452 GO:0005515
Lan13g0203 375 PANTHER PROTEIN, PUTATIVE-RELATED 1 375 - -
Lan13g0203 375 Coils Coil 149 172 - -
Lan13g0203 375 Coils Coil 1 21 - -
Lan13g0203 375 Gene3D Arfaptin homology (AH) domain/BAR domain 45 267 IPR027267 -
Lan13g0203 375 ProSiteProfiles Src homology 3 (SH3) domain profile. 302 365 IPR001452 GO:0005515
Lan13g0203 375 PANTHER SH3 DOMAIN-CONTAINING 1 375 - -
Lan13g0203 375 Coils Coil 186 213 - -
Lan13g0203 375 Gene3D SH3 Domains 302 364 - -
Lan13g0203 375 SUPERFAMILY SH3-domain 296 365 IPR036028 GO:0005515
Lan13g0203 375 SUPERFAMILY BAR/IMD domain-like 48 258 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0203 Lan-Chr13 1268130 1271728 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0203 - - lang:109325985 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0203 13 1268130 1271728 Lan13g0203 13 1268130 1271728 ECH
Lan8g1812 8 24611307 24614734 Lan13g0203 13 1268130 1271728 LSH