Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0148 ATGAAAAGACTTCTTTTCCCTTTGTTCTCATTCCCGCCGTCACTCTCTAACCGCAGATATATCGCCACCGCCGCAATGGAGTGGAAGGCTGAGCGCGTGAGGAACACATTCTTCAAATTCTTCGAAGATAAATCTCACAAATTCTACAAATCTAGTCCTGTTGTCCCTTACAATGACCCAACTCTTCTCTTCGCTAATGCTGGCATGAACCAGTTCAAGCCAATTTTTTTGGGAACTGTGGATCCTAATACTGAATTAAGCAAACTCACCCGTGCTTGCAATAGCCAAAAGTGCATTCGAGCAGGTGGTAAACACAATGATCTTGATGACGTGGGAAAAGATACATACCACCACACCTTTTTCGAGATGCTGGGAAATTGGTCGTTTGGGGATTACTTCAAAAAAGAAGCCATTAGCTGGGCATGGGAACTTCTAACCAAGGTTTATAAATTACCAACAGATCGCATTTATGCAACATATTTTGGTGGTGATGCCAGTTCTGGTCTTGCCCCTGATACTGAGGCTAGAGATGTTTGGCTTGAGTTTTTACCTCCAGAACGCGTGCTCCCTTTTGGCTGTAAGGACAATTTCTGGGAGATGGGTGATACTGGTCCTTGTGGTCCTTGCACTGAAATACATTTTGATAGAATTGGTAACCGCGACGCTGCATCATTGGTTAATAATGACGACCCTACTTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCACTTAAACCTCTACCTTCAAAGCATGTTGATACTGGGATGGGTTTTGAAAGACTGACCTCTATACTGCAGAATAAAATGAGCAATTATGACACTGATGTTTTCTTGCCTATCTTTGATGCTATTCGGCTGGCAACTGGTGCTAGGCCTTATTCTGGGAAAATTGGAGAAGAGGATGAAGATAAAGTTGACATGGCATACAGGGTTGTTGCAGATCACATCAGAACTCTGTCATTTGCCATTGCTGATGGGTCTCGTCCGGGTAATGAGGGCCGTGAGTATGTTCTGAGGCGCATACTACGTCGAGCTGTTCGTTATGGACGTGAAGTGCTAAAAGCTGAAGAAGGGTTTTTCAATGGGCTTGTTAGTGTTGTGGTAAACCTCATGCATGGTATTTTCCCTGAACTAAAAGACCGGGAAGAACACATTGTGAAAGTAATTAAAGAGGAGGAGGAAAGTTTTGGCAGAACCTTACTTAAGGGGATTGATAGATTTAAGAAATTTAAGGCGGCTGCTCAAGATGCTAAGCGAAAGACACTGAGTGGGGAGGAAGCATTTCTCTTGTGGGATACATATGGGTTCCCATTAGATCTTACTCAGCTGATGGCAGAAGAGGCACAATTGCTTGTTGATGTTGAAGGTTTTAACAGTGCCATGGAAGCTGCAAGGGAGAGATCAAGAAATGCTCAAGCAAAGGAAGGTGGTGGTGTTATTGTTATGGATGCTGATGCCACCTCAACATTACACAAAAGGGGCATTGCTCCGACAGATGATAGTTTCAAGTATGCTTGGGAGGACCATGAAAGTGTGGTAAAAGCAATATATTCTGGTTCTGAGTTTGTTGATTCTGTTAATACTGATGGGGACATTGGTATAGTTCTGGAATCTTCAAGCTTCTATGCTGAACAAGGTGGTCAGATTTTTGATACTGGATCACTTAAGGGTCCACATACATTGTTTGAAGTCCATAATGTGCAAGTTTATGGAGGTTATGTTCTACACATTGGTTCTAATGGAACTGGCATCTCTGTTGGTGACAAAGTTGTCTGTCAGGTTGATTATGAAAGGCGCAAACTTATAGCTCCTAACCATACCTGCACACATATATTAAATTTTGCTCTTAGGAAAGAGCTTGGCGACCATGTTGACCAAAAAGGATCTATTGTTCTTCCTGAAAAACTGAGATTTGATTTTTCTCATGGCAAGCCTGTTGATGCTAAAACATTGAAGAAAATTGAGGATATTGTTAATGACCAAATCAATGCTAAATTGGATGTGAGTGCAAAGGAGGCATCTCTCGCTGAAGCCAAACGTGTTAATGGTTTACGAGCTGTGTTTGGAGAAGTCTATCCTGATCCAGTTAGAATTGTGTCAATTGGACACAAAGTAGAGGATCTTGTCGCTGACCCTGATAACGAAAAATGGTTATCTATTTCAACAGAATTATGTGGTGGTACCCATATATTAAACACAGGAGAAGCTAAAGCGTTTGCACTTTTATCTGAGGAAGGAATTGCAAAAGGAATCCGCAGAATAACAGCTGTCACAGCTGATCGTGCTTATGATGCAAAGAAGGCGGCAGATGAGTTTGAACAGCAAGTGGATGATGCGGATAAGTTAGAAGGAAGTTTGCTTGAAGAGAAAGTTTCATATCTGAACCGCACCGTGGAAACACTATCAATTTCTGCAGCCAAGAAATCTGGCATCAAGGATAAGATAGCCAAACTTCAGGCTAAAGTGAGAATAGCACAAAAGCAGCTAGCTGAAGCAAACAAACGTGAAGCTGTAAGGATCACAATTGAGAAGGCTGAACTTGCAGCTTCAGAGCAGATACCTTTTTGCATATCTCATGTGGATGTTGGTCTAGATGTAGCTGCAGTTCGTGAAGCTGTTACAAAAGTCTTGGGACAGAAGGGGTTATCTGTAATGGTTTTTAGTACTGATGAATCTACAAACAAGGCTGTAGTTTGTGCTGGGGTACCAGAGAAAGGAGTTGAAGGGAAGCTTGATGTGTCAGAGTGGCTGAGTAATGCTTTGGGGCCTCTTAAAGGGAAATGTGGTAAAGGAAAAGGTGGTCTTGCGACCGGACAGGGTACAGAAGCATCACAAGTGAATGAAGCTATGAACCTTGCAGCATCATTTGCAACAATGAAGTTGAGTTAA 2913 0.4233 MKRLLFPLFSFPPSLSNRRYIATAAMEWKAERVRNTFFKFFEDKSHKFYKSSPVVPYNDPTLLFANAGMNQFKPIFLGTVDPNTELSKLTRACNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAISWAWELLTKVYKLPTDRIYATYFGGDASSGLAPDTEARDVWLEFLPPERVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPSKHVDTGMGFERLTSILQNKMSNYDTDVFLPIFDAIRLATGARPYSGKIGEEDEDKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAEEGFFNGLVSVVVNLMHGIFPELKDREEHIVKVIKEEEESFGRTLLKGIDRFKKFKAAAQDAKRKTLSGEEAFLLWDTYGFPLDLTQLMAEEAQLLVDVEGFNSAMEAARERSRNAQAKEGGGVIVMDADATSTLHKRGIAPTDDSFKYAWEDHESVVKAIYSGSEFVDSVNTDGDIGIVLESSSFYAEQGGQIFDTGSLKGPHTLFEVHNVQVYGGYVLHIGSNGTGISVGDKVVCQVDYERRKLIAPNHTCTHILNFALRKELGDHVDQKGSIVLPEKLRFDFSHGKPVDAKTLKKIEDIVNDQINAKLDVSAKEASLAEAKRVNGLRAVFGEVYPDPVRIVSIGHKVEDLVADPDNEKWLSISTELCGGTHILNTGEAKAFALLSEEGIAKGIRRITAVTADRAYDAKKAADEFEQQVDDADKLEGSLLEEKVSYLNRTVETLSISAAKKSGIKDKIAKLQAKVRIAQKQLAEANKREAVRITIEKAELAASEQIPFCISHVDVGLDVAAVREAVTKVLGQKGLSVMVFSTDESTNKAVVCAGVPEKGVEGKLDVSEWLSNALGPLKGKCGKGKGGLATGQGTEASQVNEAMNLAASFATMKLS* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0148 970 SUPERFAMILY ThrRS/AlaRS common domain 602 778 IPR018163 GO:0000166
Lan13g0148 970 CDD AlaRS_core 30 276 - -
Lan13g0148 970 SMART tRNA_SAD_4 704 763 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lan13g0148 970 Coils Coil 816 843 - -
Lan13g0148 970 PRINTS Alanyl-tRNA synthetase signature 106 117 IPR002318 GO:0000166|GO:0005737
Lan13g0148 970 PRINTS Alanyl-tRNA synthetase signature 234 245 IPR002318 GO:0000166|GO:0005737
Lan13g0148 970 PRINTS Alanyl-tRNA synthetase signature 261 274 IPR002318 GO:0000166|GO:0005737
Lan13g0148 970 PRINTS Alanyl-tRNA synthetase signature 318 334 IPR002318 GO:0000166|GO:0005737
Lan13g0148 970 PRINTS Alanyl-tRNA synthetase signature 342 355 IPR002318 GO:0000166|GO:0005737
Lan13g0148 970 Hamap Alanine--tRNA ligase [alaS]. 28 969 IPR023033 GO:0004813
Lan13g0148 970 Gene3D - 857 965 - -
Lan13g0148 970 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 704 762 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lan13g0148 970 Coils Coil 462 482 - -
Lan13g0148 970 PANTHER BNACNNG61840D PROTEIN 24 969 - -
Lan13g0148 970 SUPERFAMILY Class II aaRS and biotin synthetases 29 280 IPR045864 -
Lan13g0148 970 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 28 776 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Lan13g0148 970 Gene3D - 500 602 - -
Lan13g0148 970 Pfam tRNA synthetases class II (A) 33 606 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Lan13g0148 970 Pfam DHHA1 domain 824 963 IPR003156 GO:0003676
Lan13g0148 970 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 281 486 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Lan13g0148 970 Gene3D Bira Bifunctional Protein; Domain 2 28 277 IPR045864 -
Lan13g0148 970 TIGRFAM alaS: alanine--tRNA ligase 33 947 IPR002318 GO:0000166|GO:0005737
Lan13g0148 970 SUPERFAMILY Translation proteins 529 602 IPR009000 -
Lan13g0148 970 PANTHER ALANYL-TRNA SYNTHETASE 24 969 - -
Lan13g0148 970 Gene3D - 603 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0148 Lan-Chr13 867167 878493 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0148 K01872 - gmx:100788271 1555.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0083 7 439695 455057 Lan13g0148 13 867167 878493 LSH