Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1004 ATGGCAATATATTTTGTACTTTCAAAAGTTACAATTGTTCTATGGCTAACCATCATGATGGTCATAGGAGCACGATCATCAGAGCCATGGTCACCACTCCAAGCTCCCAAAGAACTAGTCGATAAGCTTAGTCGTGACCCTTTACTCATATCACTAGCCTCAACCGATTTTGGCCACATAATTCACGAAAACCCATTTGCAATTTTTGCTCCATCTTCTATCAATGACATCTCAAATTTAATAAAATTCTCAAATTCTCTTCCTTTCCCTTTCACTATAGCGGCCAGAGGGCAAGCCCACTCCCTTCAAGGACAATCCATGACTAATAATGGAATTGTGGTGAACATGACTGAGCTAAACCGGTTCAAAAATGGGGTTGGGATAGTAGTATCAGAAGATAAGAGTTCATTAGGTTATTATGCTGATGTGGGTGGTGAACAAATATGGATTGATGTGTTGCATGCAACACTTGAACGTGGACTTACACCACTCTCTTGGACTGACTATTTGTTCTTATCGGTTGGTGGAACACTCTCTAATGCTGGAATTAGTGGTCAATCCTTTCGATTTGGTCCTCAAATTTCCAATGTTCATGAGTTGGATGTTGTTACAGGGAAAGGAGATCTGGTAACCTGTTCTAAAGAGAAAAACTCAGATTTATTTTACGCCGTTCTTGGAGGATTAGGTCAATTTGGGATTATAACCAGAGCAAGAATAGCTCTAGGGCCTGCACCCACAAGGGTCAAGTATCTCCGTTTAATTTACAACAACTTTTCTGCTTTTATTGAAGACCAAGAACATTTAATCTCATTGGTAGGACTTAACGAAAGTAATGCACCAGATTATTTAGAAGGTTTGCTTCTGCTAAATCAGCGGCCATTGGACATTTCCTTTTATCCAGAACATGATCAGCCTCGTGTAACTTCCCTGGTAACCCAATTTGGCATATTATACGTCATAGAGCTTGTGAAGTATTATGACAACAATACTCAAGAACACATTGATGAGGATGTTAAACTTTTGGTGAAGGGCTTAAAGTTTGTTCCTACGTTTATGTTCCAAAAAGATGTGACGTACGAGGAGTTTCTAAATAGAGTTCACCCCGATGAGCTTAATCTTAGGTCACAGGGACTTTGGGATGTTCCTCATCCTTGGTTGAATCTCTTTGTTCCAAGATCACGAATTTTAGATTTCGATGAAGGTGTGTTCAAGGGTATCATACTTAAGCAAAATATTACTGCAGGAGTTGTGCTAGTTTACCCCATGAATCGGTCGAAGTGGAATGATAAGATGTCAGCAGTTACACCCAATGAAGATGTTTTCTACGTCGTGTCTCTTCTGCATACAGCTGCAACACTTGATCAATTGGAGATATTTAAGGCTCAAAATCAACAGATATTACAGTTCTGTGAGGATGCTAGTATTGGAGTCAAACAATATCTTCCTCAAAACAAAACACGAGAACAATGGGTAGAACAGTTTGGCCCCAAATGGAAATCATTTGAACAAAGAAAAGTTCAATTTGATCCCAATAGATTATTGTCTCCTGGACAAGGGATTTTCAATTAA 1569 0.392 MAIYFVLSKVTIVLWLTIMMVIGARSSEPWSPLQAPKELVDKLSRDPLLISLASTDFGHIIHENPFAIFAPSSINDISNLIKFSNSLPFPFTIAARGQAHSLQGQSMTNNGIVVNMTELNRFKNGVGIVVSEDKSSLGYYADVGGEQIWIDVLHATLERGLTPLSWTDYLFLSVGGTLSNAGISGQSFRFGPQISNVHELDVVTGKGDLVTCSKEKNSDLFYAVLGGLGQFGIITRARIALGPAPTRVKYLRLIYNNFSAFIEDQEHLISLVGLNESNAPDYLEGLLLLNQRPLDISFYPEHDQPRVTSLVTQFGILYVIELVKYYDNNTQEHIDEDVKLLVKGLKFVPTFMFQKDVTYEEFLNRVHPDELNLRSQGLWDVPHPWLNLFVPRSRILDFDEGVFKGIILKQNITAGVVLVYPMNRSKWNDKMSAVTPNEDVFYVVSLLHTAATLDQLEIFKAQNQQILQFCEDASIGVKQYLPQNKTREQWVEQFGPKWKSFEQRKVQFDPNRLLSPGQGIFN* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1004 522 Gene3D - 247 480 IPR016170 -
Lan12g1004 522 ProSiteProfiles PCMH-type FAD-binding domain profile. 61 244 IPR016166 GO:0071949
Lan12g1004 522 Gene3D - 116 246 IPR016169 -
Lan12g1004 522 SUPERFAMILY FAD-binding/transporter-associated domain-like 43 243 IPR036318 GO:0050660
Lan12g1004 522 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 10 522 - -
Lan12g1004 522 SUPERFAMILY FAD-linked oxidases, C-terminal domain 245 522 IPR016164 GO:0003824|GO:0050660
Lan12g1004 522 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 245 521 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lan12g1004 522 PANTHER GULONOLACTONE OXIDASE 10 522 - -
Lan12g1004 522 Pfam FAD binding domain 67 213 IPR006094 GO:0050660
Lan12g1004 522 Gene3D - 50 521 IPR016167 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1004 Lan-Chr12 16736793 16742006 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1004 K00279 - gmx:100808553 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1004 12 16736793 16742006 Lan15g0143 15 1510721 1515637 PCT
Lan15g0143 15 1510721 1515637 Lan12g1004 12 16736793 16742006 PCT