Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0239 ATGATGATGAAAGCCCTCGCCAGCTCTTGTTCTAAACCCATAATTGACAAGCCACTATCTTCATTTCCTAGAATTTCTTCTAATGTTCATGTTTCTGATAGAACAGATTTTTGCTTCAACCTAAGCTCAAAAAATGACCAAAAAAACTTCAACTTTTGGTTCCTGAAACTGGTCCAAAACAAGGGTATTTACCCAGTTCTTCATGCTGTGCCATCAGAAACCCAGGTGGATTTTGAAACTATGGAATCTGAACTGGAGAATGTAGCACCTCAAGATCAACAAACTGAAGAAAGTGAACAAACAAGTGAGTCGAAATTTGTTCATGTAACATTTCAGTTAGAAAAAAATTGTGACTTTGGTGAACAGTTTCTAATAGTTGGAGATGATCCCGTGCTTGGTTCGTGGGATCCGGCAGATGCCTTACCAATGACCTGGTCTGATGGGCATATATGGTCTGTCGAGCTAGATATGCCTACTGGGAAATCAATCTTGTACAAGTTCATACTGAAGGGGAAAGCAGGTGATATTGTTTGGCAACCAGGCTCAGATCGAACTATTCAAACTTCGGAAACTATGGAAAGAATAATTGTTTGTGAGGATTGGGAGAATGATGAACTTCAGAAAATAATGGAGGAAGATCGACTTGATCAATCAAATGAGGAAACCCAGGTTGACTCAGAAATGCCAAGTTTTGCTGAACATCTGGATAACCCTGAAGAGGGACTGGTATCCAATGTATCCAAAATATCAGGCATTGAAGATAGCCGAACTCATTTGCAGGAGAAACCACCTGGTGAACCAGACCTGCATCAAATCAATGATTATACTATTTCTTCCTTGACAGAAAAGCCGGTGGCTGTTGTTGTAGAAAATATAGGTTCCTCAGAGGCTCTCATTAACTGGAGTGAAGAATCTGCAGATAGTCCCGGAAATGATCATACCATACATGTTGGACACAATGGAACAGATGCACCAATAAAGAATCAGGAAATGACAGCTGTGGAGAGCAACTTGTTCGATTTCGAAGGAAGTCCCGTTATTGTACCTGGCCTAACTCCGCCTGTTGTGGCAAATGAAGAAGCAGGTTCAGGTGAAGTTCAAGAAAGTACTACTGTATACACTCCAATTGAAGCTTTTGAATCTAAGGACCAGAACATACCAGAGTTCCCTAAAGAGCAAGAATCCAATGATAGCACACCCTCAGTGATAGGCACAACAATAAACGAGGCAGAGCTGCTTAACAATGAATATGAAGAACAGTCTCAATTGGCACCAGCAATGGAAGATAGGTTAAATTCTGAGCCAGTTGATGGTAATCTCTTGCAGAACGACAACCAATGGGGCCGTCAAATGGTACTGAAGTTCCTAACAAAACTTCGATTGTTTTGA 1389 0.4096 MMMKALASSCSKPIIDKPLSSFPRISSNVHVSDRTDFCFNLSSKNDQKNFNFWFLKLVQNKGIYPVLHAVPSETQVDFETMESELENVAPQDQQTEESEQTSESKFVHVTFQLEKNCDFGEQFLIVGDDPVLGSWDPADALPMTWSDGHIWSVELDMPTGKSILYKFILKGKAGDIVWQPGSDRTIQTSETMERIIVCEDWENDELQKIMEEDRLDQSNEETQVDSEMPSFAEHLDNPEEGLVSNVSKISGIEDSRTHLQEKPPGEPDLHQINDYTISSLTEKPVAVVVENIGSSEALINWSEESADSPGNDHTIHVGHNGTDAPIKNQEMTAVESNLFDFEGSPVIVPGLTPPVVANEEAGSGEVQESTTVYTPIEAFESKDQNIPEFPKEQESNDSTPSVIGTTINEAELLNNEYEEQSQLAPAMEDRLNSEPVDGNLLQNDNQWGRQMVLKFLTKLRLF* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0239 462 SUPERFAMILY Starch-binding domain-like 104 199 IPR013784 GO:0030246
Lan12g0239 462 Gene3D Immunoglobulins 104 202 IPR013783 -
Lan12g0239 462 PANTHER OS01G0856900 PROTEIN 3 460 - -
Lan12g0239 462 CDD CBM20 109 201 - -
Lan12g0239 462 PANTHER ALPHA-AMYLASE 3 460 - -
Lan12g0239 462 SMART CBM_20_2 106 198 IPR002044 GO:2001070
Lan12g0239 462 Pfam Starch binding domain 107 192 IPR002044 GO:2001070
Lan12g0239 462 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 101 203 IPR002044 GO:2001070
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0239 Lan-Chr12 5168767 5172443 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0239 - - lang:109362848 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0239 12 5168767 5172443 Lan12g0239 12 5168767 5172443 ECH
Lan7g1372 7 19055164 19056938 Lan12g0239 12 5168767 5172443 PCT
Lan11g1706 11 33370306 33372590 Lan12g0239 12 5168767 5172443 PCT
Lan12g0239 12 5168767 5172443 Lan7g1372 7 19055164 19056938 PCT
Lan12g0239 12 5168767 5172443 Lan11g1706 11 33370306 33372590 PCT