Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0139 ATGGGGAATTGTACGGCTAAGCCTCTAGCTAATGATAATGATTCTGATCATGATGTGGAATTTGTTTCTGGGAACGTGCAACTTATTACGACAAAAGAAGCTTGGGACCAAAAGTTGGAACAAGCAAGGCATGATGGTAAAATTGTGATTGCAAATTTCACTGCAAAGTGGTGTGGTCCTTGTAAGATGATTGCACCATATTACTGCGAGTTATCAGAGAAACACCCATCCATTTCGTTCTTATTAGTTGATGTGGATGAACTGGCGGATTTCAGCAGTTCATGGGACATAAAAGCCACACCAACATTCTTCTTTCTTAGAGATGGAGAAGAGATTGACAAACTTGTAGGAGCAAACAAGCCAGAGCTGGAAAAGAAGATTGGTGCAGTTACTAAATCACCTACCTAG 408 0.4069 MGNCTAKPLANDNDSDHDVEFVSGNVQLITTKEAWDQKLEQARHDGKIVIANFTAKWCGPCKMIAPYYCELSEKHPSISFLLVDVDELADFSSSWDIKATPTFFFLRDGEEIDKLVGANKPELEKKIGAVTKSPT* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0139 135 Pfam Thioredoxin 29 127 IPR013766 -
Lan12g0139 135 ProSitePatterns Thioredoxin family active site. 50 68 IPR017937 -
Lan12g0139 135 SUPERFAMILY Thioredoxin-like 18 130 IPR036249 -
Lan12g0139 135 PRINTS Thioredoxin family signature 49 57 - -
Lan12g0139 135 PRINTS Thioredoxin family signature 57 66 - -
Lan12g0139 135 PRINTS Thioredoxin family signature 96 107 - -
Lan12g0139 135 PANTHER THIOREDOXIN H9 7 133 - -
Lan12g0139 135 CDD TRX_family 33 127 - -
Lan12g0139 135 PANTHER THIOREDOXIN 7 133 - -
Lan12g0139 135 ProSiteProfiles Thioredoxin domain profile. 8 132 IPR013766 -
Lan12g0139 135 Gene3D Glutaredoxin 1 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0139 Lan-Chr12 1591502 1596195 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0139 K03671 - gmx:100527258 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0139 12 1591502 1596195 Lan12g0139 12 1591502 1596195 ECH
Lan12g0139 12 1591502 1596195 Lan1g0953 1 20150465 20152184 LSH