Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0138 ATGGAGACACATATTGTTATTTCCTTGATCCTTTTCCTGATTCTTACTAAAACCATAAATTCAAGTGCATTTGATGGAAGTAAATCTGAAAGATGGGATAGCACTCACAAGGAACCTGAAAATCATATACCTTCTATCTTAAGTTATGGGGATGGAATGAAAGAAGAGATGGAAGCAGATGAATGGGAGATGGTGCAAAAGAAAGGAACTCAATTTGTAGTGAATGATCAACCATTCTATGTGAATGGATTCAACACTTATTGGTTGATGGTATTTGCTGCTGATGATTCCACTAGAGGAAAGGTGACAGAAGTATTCAAGCATGCATCCTCTGTTGGTATGTCAGTTTGTAGGACTTGGGCCTTTAATGATGGCCAATGGCGTGCCCTTCAGAAATCTCCATCACTTTATGATGAAGATGTATTCAAGGCCCTGGATTTTGTGGTGAGTGAAGCAAAGAAATATAGAATAAGACTGATACTATCATTGGTTAATAACTGGGAGGCTTATGGTGGCAAAGCACAATATGTTAAATGGGGCAATGATGCTGGTCTCAACTTGACTTCTGATGATGACTTCTTTTCAGATTCAACTCTCAGAGCCTACTACAAGGCCCATGTTAAGACTGTGCTTAATAGAGTGAATACATTCACAAACATCACATACAAGGAAGATCCAACAATTTTTGCTTGGGAACTGATCAATGAACCTAGATGCACCTCAGATTCTTCAGGTGATACCTTACAGGAATGGATAAAAGAAATGGCATTCTATGTAAAAAGCATTGATCCAAAACACCTACTGGAGATTGGAGTAGAAGGATTTTATGGTCCCTCCACACCTCAGAGAGTTCAGTTGAATCCAAATTCATATGCTCAACAGGTTGGAACTGATTTTATCAGGAATCATCAGGTTCTTGGTGTGGATTTTGCTTCTGTTCACATGTATCCTGACTCTTGGATTTCACAATCAATTTCTGATAGCCACCTTCCATTTATAAAGTCTTGGATGGAAGCACACATAGAAGATGCTGAAAAGTATCTTGAAATGCCAGTTATTTTTGCTGAGTTTGGTGTATCTGCAAAAGATCCTGGCTACAATTCATCATATAGAGACAACCTTATAAACACTGTGTACAAGACCATTTTAAACTCTACAAAGAAAGGAGGTAGTGGTGCAGGAAGCCTTGTGTGGCAGCTCTTTCCTGATGGAACTGATTACATGGATGATGGATATGCAATTATTCTCTCAAAATCTCCTTCCACCTCAACCATGATATCCCTTCAATCCACAAGGCTTGATCTATTCAACTCATTGTGTTCTAAGAGATGTCATTGGGGTTGCAAGAAGAAAAATGTCTTCCAAAAAGTATCCTATCGCGACGAGCTTTAA 1392 0.3879 METHIVISLILFLILTKTINSSAFDGSKSERWDSTHKEPENHIPSILSYGDGMKEEMEADEWEMVQKKGTQFVVNDQPFYVNGFNTYWLMVFAADDSTRGKVTEVFKHASSVGMSVCRTWAFNDGQWRALQKSPSLYDEDVFKALDFVVSEAKKYRIRLILSLVNNWEAYGGKAQYVKWGNDAGLNLTSDDDFFSDSTLRAYYKAHVKTVLNRVNTFTNITYKEDPTIFAWELINEPRCTSDSSGDTLQEWIKEMAFYVKSIDPKHLLEIGVEGFYGPSTPQRVQLNPNSYAQQVGTDFIRNHQVLGVDFASVHMYPDSWISQSISDSHLPFIKSWMEAHIEDAEKYLEMPVIFAEFGVSAKDPGYNSSYRDNLINTVYKTILNSTKKGGSGAGSLVWQLFPDGTDYMDDGYAIILSKSPSTSTMISLQSTRLDLFNSLCSKRCHWGCKKKNVFQKVSYRDEL* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0138 463 Gene3D Glycosidases 61 436 - -
Lan12g0138 463 SUPERFAMILY (Trans)glycosidases 65 422 IPR017853 -
Lan12g0138 463 PANTHER - 7 463 IPR045053 GO:0004553
Lan12g0138 463 Pfam Cellulase (glycosyl hydrolase family 5) 76 378 IPR001547 GO:0004553|GO:0071704
Lan12g0138 463 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 7 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0138 Lan-Chr12 1586646 1589084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0138 55 452 Glycoside Hydrolase AT5G01930 73.869 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0138 K19355 - gmx:100801139 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0138 12 1586646 1589084 Lan12g0138 12 1586646 1589084 ECH
Lan7g1426 7 19725692 19728184 Lan12g0138 12 1586646 1589084 PCT
Lan12g0138 12 1586646 1589084 Lan7g1426 7 19725692 19728184 PCT