Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0467 ATGTTCACATTACCTCACCAAAACGCAGACAATGCTATGAGAAACGACGATGAGCTACGAATGTGGTTGAACCTGTTTCCTAATCAGCCACCGTATCTGATCAATCTTTATCGTGATCACGTGGCTTCTTTCACGTCGCCTGAATCTGCTTTTATGAATCCTTTCTCTTTGTATGGTGATAAATCGCCATTTGAATGTTCATCTACTTTTCATAATAGGAACGTTCATTTTCAGTCTCAGTCTTCCTCAGATGATTTGAGACTGTGTGAGTTTTTCTCTGGAATGAACATTAGGAATGATCATGAACCTGAAAGTGGAAATGATAGTACTATGGGATATAATAACATGAGCTCACTCACATTTCCTTGTTCTTCGAATCCAAATATTCGTTCCTTCATTAAACAAGAAACAACTAACCCATTTCAACATTTCGATAATGAGGCCACCCCAGATACTAAAGGTTCCACTTTTGTTCCTCCATTTGAGAATCATGGTAGAACGCCATGTTATGGAGAATTTCAACTTCACAACCCAAACCCATCTTTTGCTACTACCTCTTACCCGTGTGATGATTTTCTATGCTCACAGTCACTTGATGCAGACTGGAATGTAAACAGTCCCTTCGCCTTCTCTCCAAATATGCAACAAAATCTTGGTTTGAATCTAAATACTCAGAGGGCAAGGGCCACTCCCAACATTGATCTTTCCCAAGTAAGAAATGGAGAGGACCCTTTAGCATTTAACTGTGATAATAGTTTTATCTTACAAGGGGAAGATGTAAAATATTGTGTTCACAATGCATGCATGTGCAAAAACAATTCCTGCAATGAGGTTGGAATTCAACAGAAAGTTCCTCAATTCATTCCAAATGTTCCGGTTAGTCATGAAAATAGTAGCAAAAGCACTCTAGGAAGTGTTATCCATGAGTCCTTGCTTCACAAATTTTATTCTCTGGCTGACACACAAGGTTTCATATATGTTCTGGCTAAGGATCAGAATGGTTGTCGCTTCCTACAGAAGTTGCTTGATGTTTGTAGAGAAGATCAAAGGTTGCAGATTGTGATAATGCTGACTAGAGAACCAGGACAACTTGTCACAACCTCCATGAACACACATGGTACACGAGTCGTTCAGAAACTGATTGAGACCCTCAAGACTAAGACGCAAGTTTCATTGCTAAGGTCTGCCATTCAGCCAGGTTTTGTTGATCTTATTAAGGATCTGAATGGAAATCATGTTATACAACGTTGCTTGCAATGCCTCAGCTGTCAAGATAATGAGTTTATTTTTGATGCTGCTACAAAGTTCTGTGTTGATATAGCTACTCATCAACATGGGTGTTGTGTACTACAACGTTGCATTGATTCTTCTCTGGGAAAGTATAGGGATAAGCTAATGACAGAAATATGCAGACATGCGCTTCTCCTCGCTCAAGATCCATATGGAAATTATGTCATTACCCATATTATAGAGATGAAGATCCCAAGTGTCTCAGCCAAACTGATTTCAAGGTTCAAAGGGAACTATGTATACCTCTCCATGCAGAAATTTAGCAGTCACGTGGTTGAAAGTTGCCTCAAGCATGTTGCAGAGAGTACTGCTAGAATAGTCCGAGAATTACTGTCTGCTACTCACTTTGAGCAGCTTCTGCAGGATCCATATGCTAACTATGTTGTTCAACGTGCTCTAGGAGTGACCAAGGGTCCTCTTCATGCATCTTTGGTTGAAGCAGTTCGCCCTCACAAATTCTTGCGCAACAGCCCATACTGCAAGAGGATTTTCTCTGGAGGGCTCCTTAAGAAGTGA 1806 0.4037 MFTLPHQNADNAMRNDDELRMWLNLFPNQPPYLINLYRDHVASFTSPESAFMNPFSLYGDKSPFECSSTFHNRNVHFQSQSSSDDLRLCEFFSGMNIRNDHEPESGNDSTMGYNNMSSLTFPCSSNPNIRSFIKQETTNPFQHFDNEATPDTKGSTFVPPFENHGRTPCYGEFQLHNPNPSFATTSYPCDDFLCSQSLDADWNVNSPFAFSPNMQQNLGLNLNTQRARATPNIDLSQVRNGEDPLAFNCDNSFILQGEDVKYCVHNACMCKNNSCNEVGIQQKVPQFIPNVPVSHENSSKSTLGSVIHESLLHKFYSLADTQGFIYVLAKDQNGCRFLQKLLDVCREDQRLQIVIMLTREPGQLVTTSMNTHGTRVVQKLIETLKTKTQVSLLRSAIQPGFVDLIKDLNGNHVIQRCLQCLSCQDNEFIFDAATKFCVDIATHQHGCCVLQRCIDSSLGKYRDKLMTEICRHALLLAQDPYGNYVITHIIEMKIPSVSAKLISRFKGNYVYLSMQKFSSHVVESCLKHVAESTARIVRELLSATHFEQLLQDPYANYVVQRALGVTKGPLHASLVEAVRPHKFLRNSPYCKRIFSGGLLKK* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0467 601 ProSiteProfiles Pumilio RNA-binding repeat profile. 396 431 IPR001313 GO:0003723
Lan11g0467 601 CDD Pumilio 323 595 IPR033712 GO:0003723
Lan11g0467 601 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 252 340 - -
Lan11g0467 601 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 338 601 - -
Lan11g0467 601 Pfam Pumilio-family RNA binding repeat 508 540 IPR001313 GO:0003723
Lan11g0467 601 Pfam Pumilio-family RNA binding repeat 437 470 IPR001313 GO:0003723
Lan11g0467 601 Pfam Pumilio-family RNA binding repeat 325 354 IPR001313 GO:0003723
Lan11g0467 601 Pfam Pumilio-family RNA binding repeat 472 486 IPR001313 GO:0003723
Lan11g0467 601 Pfam Pumilio-family RNA binding repeat 363 389 IPR001313 GO:0003723
Lan11g0467 601 Pfam Pumilio-family RNA binding repeat 545 563 IPR001313 GO:0003723
Lan11g0467 601 Pfam Pumilio-family RNA binding repeat 401 431 IPR001313 GO:0003723
Lan11g0467 601 ProSiteProfiles Pumilio RNA-binding repeat profile. 539 576 IPR001313 GO:0003723
Lan11g0467 601 ProSiteProfiles Pumilio RNA-binding repeat profile. 432 467 IPR001313 GO:0003723
Lan11g0467 601 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 252 340 - -
Lan11g0467 601 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 338 601 - -
Lan11g0467 601 Gene3D - 301 597 IPR011989 -
Lan11g0467 601 ProSiteProfiles Pumilio RNA-binding repeat profile. 359 394 IPR001313 GO:0003723
Lan11g0467 601 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 256 601 IPR033133 GO:0003723
Lan11g0467 601 ProSiteProfiles Pumilio RNA-binding repeat profile. 468 503 IPR001313 GO:0003723
Lan11g0467 601 SUPERFAMILY ARM repeat 318 594 IPR016024 -
Lan11g0467 601 SMART pum_5 541 576 IPR001313 GO:0003723
Lan11g0467 601 SMART pum_5 432 467 IPR001313 GO:0003723
Lan11g0467 601 SMART pum_5 320 355 IPR001313 GO:0003723
Lan11g0467 601 SMART pum_5 359 394 IPR001313 GO:0003723
Lan11g0467 601 SMART pum_5 504 538 IPR001313 GO:0003723
Lan11g0467 601 SMART pum_5 396 431 IPR001313 GO:0003723
Lan11g0467 601 SMART pum_5 468 503 IPR001313 GO:0003723
Lan11g0467 601 ProSiteProfiles Pumilio RNA-binding repeat profile. 317 356 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0467 Lan-Chr11 3523256 3527817 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0467 - - lang:109359467 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0467 11 3523256 3527817 Lan14g0650 14 13459640 13464754 PCT
Lan14g0650 14 13459640 13464754 Lan11g0467 11 3523256 3527817 PCT