Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0254 ATGGCGATGGAGGATCGAAACACGAACAAAAGGATGATTACGAGGTTGTCGGACGTTGTTCTAGACTGTGTGATGCCTTACATCCATGACCCAAAGGACCGTGACGCGATATCTCAGGTTTGTCGCCGATGGTACGAGCTAGACTCACTCACGAGGAAGCACGTGACGATAGCGCTCTGCTACACCACCACGCCGGAACGTCTCCGACGGCGGTTCCCACACCTGGAGTCGTTGAAGCTGAAGGGGAAGCCGAGGGCGGCGATGTTCAACTTGATACCGGAGAATTGGGGAGGGTTCGTTACCCCTTGGGTTAAGGAGATTGCACGTTACTTCGATTGTTTGAAGTCCCTGCACTTTCGTCGCATGATTGTCACTGATTCCGATCTTCAGAACCTTGCACGCTCACGTGGTCACGTGCTTCAAGCTCTCAAGCTTGATAAGTGTTCTGGTTTCTCCACCGATGGTCTTTACTATATTGGTCATTTCTGCAGGAATTTAAGAATCTTATTTTTGGAAGAAAGCAGTATCACAGAGAATGATGGTGAGTGGCTCCATGAGATTGCTATGAATAATACAGTTCTTGAGACACTGAATTTTTACTTGACAGATTTTTCCAAAGTCAGAAATCAGGATCTTGAACTTATAGCCAAAAATTGCCCCAACTTAGTCTCAGTGAAAATTACTGATTGTGAAATCTTGGGTCTTGTGAACTTCTTTCGACATGCATCTGCTCTAGAAGAATTTTGTGGAGGTTCCTACAATGAGGAACCAGAAAAGTACTCTGCTGTATCGTTACCAGCAAAGTTAAGTCGATTGGGTTTGACATATATAGGAAAGAATGAAATGCCAATAGTGTTTCCTTATGCAGCCATACTAAAAAAACTAGATCTTCTCTATGCAATGCTGGATACAGAGGACCATTGTAACTTAATCCAAAGGTGCCCCAACTTGGAAGTTCTTGAAACAAGGAATGTAATCGGAGACAGAGGATTAGAAGTACTTGCACAAAATTGTAAGAGGCTAAAAAGGCTTAGGATCGAAAGAGGTGATGATGATCAAGGAATGGCAGAAGAGGAAGGTGTTGTGTCTCAGAGAGGATTAATTGCTTTATCACAGGGCTGTCCAGAACTTGAATATATGGCTGTTTATGTATCTGACATTACAAATGCATGTCTAGAACACATTGGCACTCACTTAAAAAACCTTTGTGACTTTCGCTTTGTCTTACTAGACCGCGAAGAGAAGATAACCGATTTGCCACTTGACAATGGAGTGAGGGCTTTACTGAGGGGTTGTAATAAGCTTAGAAGATTTGCTTTGTATCTCAGACCTGGAGGCTTGACTGATGTAGGACTTGGTTACATAGGGCAATACAGCCCAAATGTGAGATGGATGCTTCTTGGTTATATCGGGGAATCTGATGCAGGACTTTTGGAGTTCTCTAAGGGCTGCCCTAGTCTTCAGAAACTTGAAATGAGGGGCTGCTCCTTTTTTAGTGAGTATGCACTATCTGTTGCTGCAACAAGGCTAACATCTCTGAGGTACTTATGGGTGCAAGGATATGGAGCATCTCCATCCAGCCTTGATCTTTTGGCTATGGCTCGCCCGTATTGGAACATCGAGATTATTCCGTCTAGACGTGTCCTTGCTAATAATGATCCTGAAGAGCCTATAATTGTTGACCATCCAGCTCATATTCTTGCATATTACTCCCTTGCTGGGCAAAGAACAGATTTTCCAGACACAGTTAAACCTTGGGATCCAGCAACATATGTTGTCACCTAA 1785 0.4375 MAMEDRNTNKRMITRLSDVVLDCVMPYIHDPKDRDAISQVCRRWYELDSLTRKHVTIALCYTTTPERLRRRFPHLESLKLKGKPRAAMFNLIPENWGGFVTPWVKEIARYFDCLKSLHFRRMIVTDSDLQNLARSRGHVLQALKLDKCSGFSTDGLYYIGHFCRNLRILFLEESSITENDGEWLHEIAMNNTVLETLNFYLTDFSKVRNQDLELIAKNCPNLVSVKITDCEILGLVNFFRHASALEEFCGGSYNEEPEKYSAVSLPAKLSRLGLTYIGKNEMPIVFPYAAILKKLDLLYAMLDTEDHCNLIQRCPNLEVLETRNVIGDRGLEVLAQNCKRLKRLRIERGDDDQGMAEEEGVVSQRGLIALSQGCPELEYMAVYVSDITNACLEHIGTHLKNLCDFRFVLLDREEKITDLPLDNGVRALLRGCNKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYIGESDAGLLEFSKGCPSLQKLEMRGCSFFSEYALSVAATRLTSLRYLWVQGYGASPSSLDLLAMARPYWNIEIIPSRRVLANNDPEEPIIVDHPAHILAYYSLAGQRTDFPDTVKPWDPATYVVT* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0254 594 Pfam Transport inhibitor response 1 protein domain 73 119 IPR041101 -
Lan11g0254 594 Gene3D - 2 52 - -
Lan11g0254 594 Pfam F-box 15 54 IPR041567 -
Lan11g0254 594 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 13 587 - -
Lan11g0254 594 SUPERFAMILY RNI-like 91 402 - -
Lan11g0254 594 Gene3D Ribonuclease Inhibitor 53 589 IPR032675 -
Lan11g0254 594 SUPERFAMILY RNI-like 367 521 - -
Lan11g0254 594 SMART LRR_CC_2 314 337 IPR006553 -
Lan11g0254 594 SMART LRR_CC_2 137 162 IPR006553 -
Lan11g0254 594 SMART LRR_CC_2 484 509 IPR006553 -
Lan11g0254 594 SMART LRR_CC_2 111 135 IPR006553 -
Lan11g0254 594 SMART LRR_CC_2 432 458 IPR006553 -
Lan11g0254 594 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 13 587 - -
Lan11g0254 594 SUPERFAMILY F-box domain 7 48 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0254 Lan-Chr11 1638305 1642324 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0254 K13463 - gmx:100793081 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0254 11 1638305 1642324 Lan11g0254 11 1638305 1642324 ECH
Lan11g0254 11 1638305 1642324 Lan9g1320 9 20438473 20442643 LSH
Lan4g0154 4 2489412 2494686 Lan11g0254 11 1638305 1642324 PCT
Lan11g0254 11 1638305 1642324 Lan4g0154 4 2489412 2494686 PCT