Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0238 ATGGCGGCTGCGAACGCTCCGATCTCCATGAAAGAAGCCTTAACTTTGCCGAGTATTGGCATCAATCCACAATTCATCACTTTCACGCATGTGACGATGGAATCGGATAAGTATATTTGTGTTCGGGAAACGGCTCCGCAGAATAGCGTGGTTATCATTGATATGACCATGCCAAATCAGCCCTTGAGGAGGCCTATCACAGCGGACTCTGCTCTTATGAATCCGAATTCTAGAATCCTTGCTTTGAAAGCCCAACTCCAAGGGACAACTCAGGATCACCTACAAATATTTAATATTGAGCTTAAAGCAAAGATAAAGTCATATCAGATGCCTGAGCAGGTAGTCTTCTGGAAGTGGATTAGCCCCAAGATATTAGGTCTCGTAACACAGACCTCTGTATACCACTGGTCGATTGAAGGAGACTCTGAACCTGTAAAGATGTTTGATAGAACTGCGAATTTGGCGAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTCTTGATTGGCATTGCTCCTGGTTCCCCTGAGAGGCCACAGTTGGTTAAAGGAAGCATGCAACTTTTCTCTGTGGATCAGCAGCGGAGTCAGGCTCTTGAAGCTCATGCTGCATCATTTGCCCAATTTAAAGTTCCTGGGAATGAAAATCCTTCTGTTTTGATTTCTTTTGCCTCAAAGACACTTAATGCTGGTCAAGTTATATCAAAGTTGCATGTTATTGAGTTGGGGGCACAGCCAGGGAAGCCATCATTTACAAAGAAACAAGCAGATCTTTTCTTCCCACCAGATTTTGCCGATGACTTTCCAGTTGCCATGCAGATATCCCATAAATACAGTTTGATTTATGTCATTACCAAACTTGGCCTACTATTTGTTTATGATTTGGAGACAGCTACTGCAGTATATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACATCAGAAGCTACATCAGCTGGAGGCTTTTATGCTATCAACAGGAGAGGGCAGGTGTTATTGGCTACTGTTAATGAACAAACCATCGTGAACTTTGTCAGTGGTCAATTAAATAATTTGGAGCTAGCAGTTAATCTTGCCAAAAGAGGAAATCTTCCTGGCGCTGAGAAACTGGTAGTCGAACGTTTCCATGAACTGTTTGCCCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAATCTCCACAAGGAATCCTTCGTACACCCGACACAGTTGCTAAATTTCAGAGTGTTCCTGTCCAAGCTGGGCAAACTCCTCCTCTTTTGCAGTATTTTGGAACACTTTTGACAAGGGGAAAGCTGAATGCCTTTGAGTCAATAGAATTGTCTCGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTCGAGTGCAGTGAGGAGCTAGGAGATCTTGTTAAGACTGTAGACAATGATCTTGCTCTGAAAATATATATCAAAGCTAGAGCTACTCCGAAAGTTGTTGCTGCATTTGCTGAGAGGAGGGAGTTTGATAAAATTCTGATCTACTCTAAGCAGGTTGGGTACACGCCTGACTACCTCTTCCTTTTGCAAACAATTCTTCGGACCGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGCGGTTGCCCAGTTGATTACAACACAATAACCGATCTGTTTCTACAGAGAAACCTGATCCGTGAGGCAACTGCCTTTCTCCTAGATGTTCTAAAGCCGAATCTACCGGAACATGGATTCCTTCAGACGAAGGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGACGCGATTTTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCACAACTTTGTGAAAAAGCTGGACTTTACGTGCGAGCTTTGCAACATTACACAGATTTGTCCGATATAAAACGTGCGATTGTAAATACACATGCAATTGAGACTCAGTCACTTGTAGAGTTTTTTGGTACTCTGTCACAAGAATGGGCATTAGAGTGCATGAAAGATCTATTGATAGCCAATCTTAAAGGCAATCTGCAGTTAATTGTGCAGGTTGCTAAAGAATATTGTGAACAATTGGGCGTTGATGGCTGCATAAAACTTTTTGAGCAGTTTAGGTCATATGAAGGACTGTACTTTTTTCTTGGGTCATATTTGAGTTCCAGTGAGGATCCTGACGTTCACTTCAAGTACATTGAGGCAGCAGCGAAGACTGGTCAAATCAAAGAGGTCGAGCGTGTGACAAGAGAATCAAATTTCTACGATCCGGAGAAAACGAAAAATTTTCTAATGGAGGCTAAGCTTCCAGATGCACGGCCTTTAATTAATGTTTGTGACCGTTTCGGATTTGTTCCAGATCTAACACACTATCTATACACAAACAACATGCTTCGTTACGTTGAAGGTTATGTTCAGAAGGTGAACCCTGGGAATGCTCCTTTAGTTGTTGGGCAGCTGCTAGATGATGAGTGTCCTGAAGATTTTATCAAAGGCTTGATTCTTTCTGTTCGTTCTTTACTGCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGGCTTCGTTTGCTTACACAATTCTTGGAACATCTTGTAAGCGAGGGAAGTCAGGATGTACATGTTCACAATGCACTGGGTAAAATTATCATTGATAGCAATAACAACACAGAACATTTTCTCACAACCAATCCATACTATGATTCTCGAGTTGTTGGCAAGTACTGTGAGAAACGTGACCCCACCTTGGCAGTATTAGCTTACCAGAGAGGACAATGTGATGATGAACTTATCAATGTCGCGAACAGAAACTCTTTGTTCAAACTGCTAGCAAGATATGTTGTTGAGAGAATGGATGGTGATCTATGGGCCAAAGTTCTTGATCCTGATAATGAGTACAGAAGGCAACTCATTGACCAGGTTGTCTCTACTGCCTTGCCTGAAAGCAATAGCCCTGAACAAGTTTCTGCAGCTGTTAAGGCTTTCATGACAGCTGATCTTCCTCATGAATTGATCGAACTTCTTGAGAAAATTGTGCTTCAGAATTCTGCATTCAGTGGGAACTTTAATTTGCAGAATCTTCTAATTTTGACAGCGATTAAGGCTGATCAATCCAGAGTTATGGATTATATTAATAGACTGGATAATTTTGATGGACCTGCTGTTGGAGAAATGGCTGTAGAAGCTCAGTTATATGAGGAAGCATATGCAATTTTCAAGAAGTTCAACTTGAACGTTCAAGCAGTTGATGTATTGTTAGACAATGTTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTCAGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCGCAACTCAGGGAAGGGCTATTAAGTGATGCAATTGAGTCATTTATACGAGCAGATGACGCCACACAATATTTGGATGTTATCCGTGCTGCTGAAGACTCTGATGTTTACCATGACTTGGTAAAATACTTGCTGATGGTAAGACAGAAGGCTAAAGAACCGAAGGTGGACAGTGAGCTTATTTATGCGTATGCAAAGATTGATAGGCTTAGTGACATTGAAGAGTTCATTCTTATGCCCAATGTTGCTAATCTTCAAAATGTTGGTGACCGGTTGTATGATGAAGAATTATATGAGGCTGCAAAAATCATATTTGCTTTTATATCTAACTGGGCTAAATTGGCTATAACGCTGGTCAAGTTAAAACAGTTCCAAGGTGCTGTTGATGCAGCAAGGAAAGCCAATAGCTCGAAAACCTGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCAGAGGAGTTTCGTTTGGCCCAGATATGTGGGCTCAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGCTGCTTCAATGAGCTAATATCTCTCATGGAAAGTGGTTTAGGGTTAGAACGGGCACATATGGGCATCTTCACTGAGTTAGGTGTTCTGTATGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTCTCAACCCGCCTCAATATTCCAAAACTCATAAGAGCCTGTGATGAACAACAGCATTGGAAAGAATTAACCTATTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAACCATTCACCCGAAGCATGGGATCACATGCAATTCAAAGATGTTATTGCGAAAGTTGCTAATGTGGAGTTGTATTACAAGGCTGTTCACTTCTATTTGCAAGAGCATCCTGATCTTATCAATGATGTTCTCAATGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGAGAAAGGCTGGCCACCTCCGTCTTGTGAAGCCTTACATGGTTGCAGTTCAGAGCAACAATGTATCTGCTGTTAATGAAGCCTTGAACGAGATATATGTTGAGGAGGAAGATTATGATAGATTGCGTGAGTCGATTGATTTGCATGATAACTTCGATCAAATAGGCCTTGCACAAAAGATTGAAAAACATGAGCTACTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGTAGGTGGAAGCAGTCCATTGCCTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCCTCACAATCTGGTGAGCGTGAGCTTGCTGAAGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAGGAATGCTTTGCTTCGTGTCTATTTGTTTGCTATGATTTAATACGGGCAGACGTTGTTCTTGAGCTGGTGTGGACTCACAATATGATTGACTTTGCATTCCCATATCTCTTGCAGTTTATCCGTGAGTACACTGGCAAAGTTGATGAACTGGTGAAGGACAAAATTGAAGCACAGAAAGAAGTGAAGGCTAAAGAAAACGAAGAAAAAGATGTAGTTGCACAACAGAACATGTATGCTCAACTGTTGCCACTTGCTTTACCTGCACCACCAATGCCTGGAATGGGAGGTGGTTTTGCTCCTCCCCCTCCAATGGATGGAGGACTCGGGATGCCACCAATGCCTCCTTATGGCATGCCCGCCATGGGTGGCAGTTACTGA 5109 0.4206 MAAANAPISMKEALTLPSIGINPQFITFTHVTMESDKYICVRETAPQNSVVIIDMTMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIELKAKIKSYQMPEQVVFWKWISPKILGLVTQTSVYHWSIEGDSEPVKMFDRTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGSMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFASKTLNAGQVISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSAGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESIELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTDLSDIKRAIVNTHAIETQSLVEFFGTLSQEWALECMKDLLIANLKGNLQLIVQVAKEYCEQLGVDGCIKLFEQFRSYEGLYFFLGSYLSSSEDPDVHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYVEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNTEHFLTTNPYYDSRVVGKYCEKRDPTLAVLAYQRGQCDDELINVANRNSLFKLLARYVVERMDGDLWAKVLDPDNEYRRQLIDQVVSTALPESNSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADQSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAYAIFKKFNLNVQAVDVLLDNVHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLLSDAIESFIRADDATQYLDVIRAAEDSDVYHDLVKYLLMVRQKAKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIFAFISNWAKLAITLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVIAKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADVVLELVWTHNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQKEVKAKENEEKDVVAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPMDGGLGMPPMPPYGMPAMGGSY* 1703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0238 1702 Coils Coil 1477 1497 - -
Lan11g0238 1702 Gene3D - 1542 1638 - -
Lan11g0238 1702 SUPERFAMILY ARM repeat 901 1066 IPR016024 -
Lan11g0238 1702 Gene3D - 1 377 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lan11g0238 1702 Pfam Clathrin-H-link 369 434 - -
Lan11g0238 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 993 1138 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 SUPERFAMILY Clathrin heavy-chain terminal domain 5 343 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lan11g0238 1702 SUPERFAMILY ARM repeat 1051 1195 IPR016024 -
Lan11g0238 1702 SUPERFAMILY ARM repeat 345 500 IPR016024 -
Lan11g0238 1702 Pfam Clathrin, heavy-chain linker 344 367 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lan11g0238 1702 Pfam Region in Clathrin and VPS 993 1131 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 Pfam Region in Clathrin and VPS 850 983 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 Pfam Region in Clathrin and VPS 1440 1579 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 Pfam Region in Clathrin and VPS 1292 1431 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 Pfam Region in Clathrin and VPS 557 690 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 Pfam Region in Clathrin and VPS 1145 1281 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 Pfam Region in Clathrin and VPS 701 840 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 PANTHER CLATHRIN HEAVY CHAIN 1 1701 - -
Lan11g0238 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1288 1434 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 SUPERFAMILY ARM repeat 457 793 IPR016024 -
Lan11g0238 1702 Gene3D Tetratricopeptide repeat domain 1197 1536 IPR011990 GO:0005515
Lan11g0238 1702 Gene3D Tetratricopeptide repeat domain 901 1055 IPR011990 GO:0005515
Lan11g0238 1702 Gene3D Tetratricopeptide repeat domain 1056 1196 IPR011990 GO:0005515
Lan11g0238 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1142 1283 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 SMART CLH_2 1288 1434 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 SMART CLH_2 847 986 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 SMART CLH_2 700 842 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 SMART CLH_2 1437 1596 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 SMART CLH_2 993 1138 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 SMART CLH_2 551 693 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 SMART CLH_2 1142 1283 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1437 1580 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 Coils Coil 1617 1651 - -
Lan11g0238 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 551 697 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 SUPERFAMILY ARM repeat 1196 1531 IPR016024 -
Lan11g0238 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 847 986 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 700 842 IPR000547 GO:0006886|GO:0016192
Lan11g0238 1702 Pfam Clathrin propeller repeat 154 197 IPR022365 -
Lan11g0238 1702 Pfam Clathrin propeller repeat 20 55 IPR022365 -
Lan11g0238 1702 PIRSF CHC 3 1681 IPR016341 GO:0016192|GO:0032051|GO:0071439
Lan11g0238 1702 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 1701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0238 Lan-Chr11 1511212 1524334 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0238 K04646 - gmx:100786617 3150.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0238 11 1511212 1524334 Lan11g0238 11 1511212 1524334 ECH
Lan15g0111 15 761818 772776 Lan11g0238 11 1511212 1524334 PCT
Lan14g0161 14 2017280 2028617 Lan11g0238 11 1511212 1524334 PCT
Lan11g0238 11 1511212 1524334 Lan15g0111 15 761818 772776 PCT
Lan11g0238 11 1511212 1524334 Lan14g0161 14 2017280 2028617 PCT