Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0062 ATGGCGAAGGAGAACGAACCCGCGAAGCTTCTGTTACCATACCTTCAACGTGCCGATGAGTTGCAAAACCATGAACCTATCGTCGCTTATTACTGTCGATTATATGCGATGGAACGTGGATTGAAGTTTCCACAGAGTGAGCGCACCAAAACCACTAATTCCCTTCTTATCTCTCTTATGAAGCAACTTGAAAAGGATAAAAATTCGATTCAGTTGGGGCATGAAGATAATTTATATGTTGAGGGATTTGCTTTGAATGTGTTTGGAAAAGCAGACAAGCAGGATCGTGCTGGAAGAGCTGATTTGAATACGGCAAAAACATTTTATGCTTCTAGCATCTTTTTTGAGATTCTTAATCAATTCGGAGCACTTCAGCCTGATCTGGAGCAGAAACAGAAATATGCAGTCTGGAAAGCAGCAGATATAAGAAAGGCTTTGAAAGAAGGAAGGAAGCCTGTTGCTGGTCCACCTGACGGCGATGAAGATCTGTCAATTCCTCCGAGTACTCCTAATAATGAATATGACACTGGGACTAATGGAACTACTATTACCAGTCCTGGACCAGAATCTGATCCTTCACATAATCATGATAACCCTGTCAACTACCAGAATCTGCCGACCACTCATCCTACACCTAAATTCCATGATACTATTAACGACCAGCATTCTACAAGCATTCCACCATCTATGCAGTTTTATGAAGGAGTTAATAATAATAAGCATTCTTCCAATTTTTCTCCATCATCTCACCCTCATGCATCCACAGGTTATCCTTCCCAAGACTATCCTCCTCCTCCACCCTCCCAAGATTACCATGCCCCTCCACCTTCACAAGATTATCACACTCCATCTTCCCATGATTACCATTCTCCTCCACCTAGGAGATCAGAAACATCTTATCCTGAGCCCTACACCCATCAGCACTACTCACCTGAGAATTCACAGCATTTAGGTCCTAACTACCCTTCTCATGAAACTTCCTCTTACCCCCATTTTCAGTCGGCTCCAAGTTTTACAGAAAACAACCTACCATCAGTCCCTTCAAATTATACTTATTATCAAAGCTCTGATGCTTCATACTCTTCCCAATCAGCTCCACTAACTACAAACCATCCCTCAAGTGCACAACACAGTTCCAGCAGCAGAAATGGAATTGTCTCGGAACCTAACCCAACTACTCAGACATATCAGTATGACAGTAACTACCGGCTAACACCTGAAAAAATTGCTGAGGCACACAAAGCTGCAAGATTTGCCGTTGGGGCACTGGCATTTGATGATGTGTCAGTTGCAGTTGACTACCTAAAGAAATCGCTTGAGTTGTTGACAAATCCATCAGTTAGTCAGTAA 1350 0.4267 MAKENEPAKLLLPYLQRADELQNHEPIVAYYCRLYAMERGLKFPQSERTKTTNSLLISLMKQLEKDKNSIQLGHEDNLYVEGFALNVFGKADKQDRAGRADLNTAKTFYASSIFFEILNQFGALQPDLEQKQKYAVWKAADIRKALKEGRKPVAGPPDGDEDLSIPPSTPNNEYDTGTNGTTITSPGPESDPSHNHDNPVNYQNLPTTHPTPKFHDTINDQHSTSIPPSMQFYEGVNNNKHSSNFSPSSHPHASTGYPSQDYPPPPPSQDYHAPPPSQDYHTPSSHDYHSPPPRRSETSYPEPYTHQHYSPENSQHLGPNYPSHETSSYPHFQSAPSFTENNLPSVPSNYTYYQSSDASYSSQSAPLTTNHPSSAQHSSSSRNGIVSEPNPTTQTYQYDSNYRLTPEKIAEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTNPSVSQ* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0062 449 Gene3D - 4 152 IPR023175 -
Lan11g0062 449 Pfam Vta1 like 13 148 IPR039431 -
Lan11g0062 449 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 311 IPR044538 GO:0032511
Lan11g0062 449 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 277 446 IPR044538 GO:0032511
Lan11g0062 449 MobiDBLite consensus disorder prediction 300 343 - -
Lan11g0062 449 MobiDBLite consensus disorder prediction 148 343 - -
Lan11g0062 449 MobiDBLite consensus disorder prediction 360 398 - -
Lan11g0062 449 Gene3D Immunoglobulin FC, subunit C 405 444 - -
Lan11g0062 449 MobiDBLite consensus disorder prediction 258 273 - -
Lan11g0062 449 MobiDBLite consensus disorder prediction 165 256 - -
Lan11g0062 449 Pfam Vta1 C-terminal domain 406 443 IPR041212 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0062 Lan-Chr11 370864 373804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0062 7 118 Glycosyltransferase AT2G31960 25.620 6.03e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0062 K12199 - gmx:100783739 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1335 2 24117606 24120997 Lan11g0062 11 370864 373804 LSH