Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0109 ATGTCGGGGTTACTTAATTCTTCGCTAAATGGATCTGCTTCAAATCTTCCAGACGGTGCTGGGCGCTCTTTTGCTACATCATTCTCTGGTCAGTCTGGTGCAGGATCTATTCAGGGGTTGCATAACATCCATGGGACCTTTAATGTTCCAAACATGCCTGGTTCACTCTCATCAAGAAACTCAACCATAAATAGTGTTCCAACTGGGGGGGCTCAACAACCTACGTCAAGCCTTTCTAGTGGAAGATTTGCATCAAATAATCTACCTGTTGCACTGTCACAGCTATCCCATGGAAGCTCCCATGGACCTTCAGGAGTCAATAATAGAGGAGGATTGGGAGTATCCCCAATTCTGGGAAATGCAGGTTCTCGAATTACAAGTCCTATGGGAAACATGGTCAGCGGGGGAAACATCGGGAGGATAAGCTCTGGTGGAGGATTGTCTGTACCTGGTCTTGGTCGTTTAAATTTAAGCGGAAATGGTGGATTAGGTGTGCAAGGACAAAATCGACTGATGGGTGGTATGCTTCCACAAGGATCTCCACAGGTAATTTCAATGCTAGGAAGCTCTTATCCTGGTGCTGGTGGTCCACTTTCACAAAGTCATGTTCAAGCAGTAAATAGCTTGAATTCAATGGGGATGTTGAATGATGTGAATTCCAGTGACAGTTCACCTTATGACATCAATGACTTTCCTCAACTGACAAGTCGTCCTAGTTCTGCTGGAGGACCTCAAGGGCAGTTGGGTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTCCAACAAAACCAAGAGTTTAGTATTCAAAGTGAAGATTTCCCAGCTTTACCGGGATTTAAAGGTGGTAATGCAGATTTTGGCATGGATATGCACCAGAAAGAACAACTTCATGACAATGCTGTATCAATGATGCAATCTCAGCATTTCCCAATGGGGAGGTCTGGTGGTTTCAATTTGGGGGGATCATATTCATCACATCGCACACAGCAGCAACAGCAGCATGGTCCTTCAGTCAGTAGCGGTGGTGTCCCCTTTTCATCTATAAATAATCAAGATCTTCTCCATCTGCATGGGTCAGATGTTTTTCCAGCATCACACTCAACGTATCATTCCCAATCACAGACCAGCGGACCTCCTGGCATTGGATTAAGGCCTCTAAATTCTCCAAATACTGTTTCTGGGATGAGTTCATATGACCAACTCATCCAGCAGTATCAACAAAATCAGAGCCAATCCCAGCTCCGCACCCTTCAGCAAATGTCAGCTGTAAATCAGTCTTTTAGGGATCAGGGCCTGAAGTCTATGCAAACTGGACAATCTAGTCCAGATCCATTTGGTTTGCTTGGCTTGTTAAGTGTCATCAGGATGAGTGATCCTGACCTGACATCTCTTGCTCTTGGAATTGACCTTACAACACTTGGGTTAAATTTGAATTCATCAGAAAATCTTCACAAGACTTTTGGGTCTCCATGGTCTGATGAAGCGGCTAAGGGTGATCCAGAGTTCAGTGTGCCACAATGTTATTATGCTAAACAGCCTCCTGCTCTACATCAAGGTTACTTTTCAAAGTTTTCGGTGGAAACGTTGTTTTACATATTTTACAGCATGCCCAAAGATGAGGCACAGCTATATGCAGCTAATGAACTTTACAAACGAGGGTGGTTTTATCACAAAGAGCATCGGTTGTGGTTTATAAGAGTTGCCAACATGGAGCCACTTGTCAAAACAAACACATATGAGAGAGGATCTTACCACTGTTTTGATCCAAGCACTTTTGAAACGGTCCGGAAGGATAATTTTGTTCTTCATTATGAAATGTTGGAGAAGAGACCACCTTTGCCGCAACATTGA 1857 0.4389 MSGLLNSSLNGSASNLPDGAGRSFATSFSGQSGAGSIQGLHNIHGTFNVPNMPGSLSSRNSTINSVPTGGAQQPTSSLSSGRFASNNLPVALSQLSHGSSHGPSGVNNRGGLGVSPILGNAGSRITSPMGNMVSGGNIGRISSGGGLSVPGLGRLNLSGNGGLGVQGQNRLMGGMLPQGSPQVISMLGSSYPGAGGPLSQSHVQAVNSLNSMGMLNDVNSSDSSPYDINDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQSEDFPALPGFKGGNADFGMDMHQKEQLHDNAVSMMQSQHFPMGRSGGFNLGGSYSSHRTQQQQQHGPSVSSGGVPFSSINNQDLLHLHGSDVFPASHSTYHSQSQTSGPPGIGLRPLNSPNTVSGMSSYDQLIQQYQQNQSQSQLRTLQQMSAVNQSFRDQGLKSMQTGQSSPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDEAAKGDPEFSVPQCYYAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRLWFIRVANMEPLVKTNTYERGSYHCFDPSTFETVRKDNFVLHYEMLEKRPPLPQH* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0109 618 MobiDBLite consensus disorder prediction 366 397 - -
Lan10g0109 618 Pfam NOT2 / NOT3 / NOT5 family 487 609 IPR007282 GO:0006355
Lan10g0109 618 PANTHER CCR4 NOT-RELATED 2 114 IPR040168 GO:0030015
Lan10g0109 618 PANTHER CCR4 NOT-RELATED 112 618 IPR040168 GO:0030015
Lan10g0109 618 MobiDBLite consensus disorder prediction 315 348 - -
Lan10g0109 618 MobiDBLite consensus disorder prediction 216 252 - -
Lan10g0109 618 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 112 618 - -
Lan10g0109 618 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 114 - -
Lan10g0109 618 MobiDBLite consensus disorder prediction 216 247 - -
Lan10g0109 618 Gene3D - 438 618 IPR038635 -
Lan10g0109 618 MobiDBLite consensus disorder prediction 45 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0109 Lan-Chr10 629650 635879 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0109 K12605 - gmx:100807026 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1964 6 30571270 30578344 Lan10g0109 10 629650 635879 LSH
Lan10g0109 10 629650 635879 Lan7g0266 7 1703383 1710275 PCT
Lan7g0266 7 1703383 1710275 Lan10g0109 10 629650 635879 PCT