Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1493 ATGCAAAACTCTCTTTCATTTGTCTCCTTCCATCTCCATTTTCTCTCTCCAAACCCTATCATTACCTTCCACAACAACAACACCTTTCATCTCCTCCAACTCTCAAAATCCCCTTCACCATCCATTACAACCAAAAACAACAACAACAACAACAGGAATAAGAATAAGAACAAGAAATTACTCAATAAACCATTCCAAGAAAAAGATGCATTCCCTTCTTCCTTACCTCTCCACACCAAAAACCCACGTTCCATTTACAATGACATCAAAAGATTCGCACGTCTTAACAAACTCAAACAAGCTCTCACCATTTTAGACTATGTTGATCAAAAGGGTATTCCTGTAAATGCCACTACTTTCTCTGCACTTATTGCTGCTTGTATCAGAACTAAATCACTTTCACAAGGAAGAGAAATTCATACCCATATTACCATCAATGGTCTTGAAAAGAATGAATTTTTAAGAACAAAACTTGTTCAAATGTATACTTCTTGTGGGTCATTGGAAGATGCTAAGAAGTTGTTTGATGGGTCGGGGTGTGTTGGTGGTGGGAGTGTGTATCCATGGAATGCATTGCTTAGAGGGACTGTTGTTGCTGGGAAGAGGAATTACATTGATGTGCTTGATACTTATTCTCAGATGAGGGAGTTGGGGGTTGAGTTTAATGTCTATAGTTTTTCTAGTGTTATTAAGGGGTTTGCGGCTGCGAAGGCGGTTTTTCATGGCTTGAAGACACATGCCCTTTTGATTAAGAGTGGGTTTGCTGGGAATTTTATTCTTAGGACTAGTTTGATTGATATGTATTTTAAGTGTGGTAAGGTTAAGCTTGCGCGCCGTGTGTTTGATGAGATTGCTGAGAGAGATGTTGTGGTGTGGGGAGCTATGGTTGCAGGTTTCGTGCATAATAGGTTGGAGAGGGAAGCGTTTGAGTTCGTTAGGTTGATGGTGGAGGAAGGAGTGGAGGTGAATTCGGTTATAGTGATGAGTGTTCTTCCTGCGATTGGGGAAGTTCGTGCGCGAAGGTTAGGTCAGGAGGTTCATGCTCATGTAGTGAAGACGAAATCATACTCTAGGCAGGTGACGATTCAATCTGCTTTGATTGATATGTATTGCAAGTGTGGGGATATGAATTCAGCAAGACGGGTTTTTTATGGCTGTTCAGAGAGAAATGTCGTTTGTTGGACTGCTCTGATGTCAGGTTATGCTTCAAATGGTAGACTGGAGCAGGCACTAAGGTCCACAATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTGGTGACAATTGCCACCGTTCTTCCAATTTGTGCTAAGTTGAGAGCTCTAGATGAAGGGAAGCAGGTTCATGCTTATGCTTTAAAACATTGGTTTATGCCTAATGCATCTTTAACTTGTTCTTTGATGGTAATGTATGCAAAGTGCGGCGTGATTGAGTATACTGAAAGACTGTTTAATGGTATGGAGCATAGAAACATGATTTCATGGACAGCCATGATTGATTCATATGTAGAAAATGGGTGCCTGTTTGAAGCACTTGGCGTGATAAGGTCAATGCAATTGTCAAACCATAGGCTAGACCCAGTTGCCATATCAAAGATGTTGAGTGTTTGTGGTGAACTAAACCTAGTGAAACTTGGGAAGGAGATTCATGGGCAGTTTTTGAAAAGGAATTTCACATCAGTCCATTATGTTTCTGCAGAACTTATCAATATGTATGGGAAGTTTGGAGATGTTAATAAGGCTAAGTTGGTTTTTAATACAGTTCCCGTTAGAGGTTCCATGACATGGACTGCTCTTATAAAGGCCTATGGTTACAATGATTTGTATCTAGATGCAATTGACCTTTTTGAACATATGAGATCAAATGGTTCTTCTCTAACCCACTTCACTTTTGAAGCCATTCTATCTATATGCGACAGAGCTGGGTTTGTTGATGATGCTTGTAGAATCTTCAATTTAATGCCTAGCTATAAAATTGAAGCAAATAAGGAACACTTCACCACAATGGTCCAACTTCTTACTCATCATGGTCAACTAGAGAAAGCTAAGAGGTTTATGCAAATGGGATCTTCCTTGTAG 2079 0.4026 MQNSLSFVSFHLHFLSPNPIITFHNNNTFHLLQLSKSPSPSITTKNNNNNNRNKNKNKKLLNKPFQEKDAFPSSLPLHTKNPRSIYNDIKRFARLNKLKQALTILDYVDQKGIPVNATTFSALIAACIRTKSLSQGREIHTHITINGLEKNEFLRTKLVQMYTSCGSLEDAKKLFDGSGCVGGGSVYPWNALLRGTVVAGKRNYIDVLDTYSQMRELGVEFNVYSFSSVIKGFAAAKAVFHGLKTHALLIKSGFAGNFILRTSLIDMYFKCGKVKLARRVFDEIAERDVVVWGAMVAGFVHNRLEREAFEFVRLMVEEGVEVNSVIVMSVLPAIGEVRARRLGQEVHAHVVKTKSYSRQVTIQSALIDMYCKCGDMNSARRVFYGCSERNVVCWTALMSGYASNGRLEQALRSTIWMQQEGFRPDVVTIATVLPICAKLRALDEGKQVHAYALKHWFMPNASLTCSLMVMYAKCGVIEYTERLFNGMEHRNMISWTAMIDSYVENGCLFEALGVIRSMQLSNHRLDPVAISKMLSVCGELNLVKLGKEIHGQFLKRNFTSVHYVSAELINMYGKFGDVNKAKLVFNTVPVRGSMTWTALIKAYGYNDLYLDAIDLFEHMRSNGSSLTHFTFEAILSICDRAGFVDDACRIFNLMPSYKIEANKEHFTTMVQLLTHHGQLEKAKRFMQMGSSL 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1493 692 MobiDBLite consensus disorder prediction 38 55 - -
Lal9g1493 692 TIGRFAM PPR: pentatricopeptide repeat domain 493 526 IPR002885 -
Lal9g1493 692 TIGRFAM PPR: pentatricopeptide repeat domain 262 290 IPR002885 -
Lal9g1493 692 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Lal9g1493 692 TIGRFAM PPR: pentatricopeptide repeat domain 595 626 IPR002885 -
Lal9g1493 692 Gene3D Tetratricopeptide repeat domain 234 340 IPR011990 GO:0005515
Lal9g1493 692 Pfam PPR repeat family 389 436 IPR002885 -
Lal9g1493 692 Pfam PPR repeat 290 320 IPR002885 -
Lal9g1493 692 Pfam PPR repeat 568 586 IPR002885 -
Lal9g1493 692 Pfam PPR repeat 595 623 IPR002885 -
Lal9g1493 692 Pfam PPR repeat 262 288 IPR002885 -
Lal9g1493 692 Pfam PPR repeat 364 384 IPR002885 -
Lal9g1493 692 Pfam PPR repeat 493 521 IPR002885 -
Lal9g1493 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 626 IPR002885 -
Lal9g1493 692 Gene3D Tetratricopeptide repeat domain 414 564 IPR011990 GO:0005515
Lal9g1493 692 Gene3D Tetratricopeptide repeat domain 341 413 IPR011990 GO:0005515
Lal9g1493 692 Gene3D Tetratricopeptide repeat domain 565 691 IPR011990 GO:0005515
Lal9g1493 692 Gene3D Tetratricopeptide repeat domain 84 204 IPR011990 GO:0005515
Lal9g1493 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Lal9g1493 692 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 39 685 - -
Lal9g1493 692 MobiDBLite consensus disorder prediction 38 62 - -
Lal9g1493 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Lal9g1493 692 PANTHER OS07G0578800 PROTEIN-RELATED 39 685 IPR045215 GO:0003723|GO:0009451
Lal9g1493 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1493 Lal-Chr9 17214710 17216788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1493 70 686 Glycoside Hydrolase AT3G49170 27.962 3.48e-77 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1493 - - lang:109360675 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0125 14 1253642 1255279 Lal9g1493 9 17214710 17216788 PCT