Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0549 ATGCCGAACAAGAACTTGGAAAAGATGGCATCTATTGATGCTCAGCTTAGGCAATTGGTTCCAGCTAAAGTCAGTGAGGATGATAAACTGGTTGAGTATGATGCTCTTCTCTTGGATCGGTTCCTCGATATTCTCCAGGATTTACATGGAGAGGATCTGAAGGAAACGGTTCAAGAAGTATATGAGCTTTCTGCTGAATATGAAGAAAAGCATGACCCTGCGAAACTAGAAAAACTCGGCAATTTAATAACTAGTTTGGATGCTGGAGACTCCATTGTTTTTGCCAAGGCCTTTTCCCACATGCTTAACTTGGCCAACTTAGCTGAAGAGGTCCAGATTTCTCATCGCCGAAGAAACAAGTTGAAGAAAGGGGATTTTGCTGATGAGAATAATGCAACTACTGAATCAGACATTGAAGAAACTTTCAAGAGACTTGTAGGGGAACTGAAGAAGTCTCCTCAGGAAGTTTTCGATGCACTGAAAAATCAGACTGTTGATCTGGTTTTTACTGCTCATCCTACTCAATCAGTTCGTCGATCCGTCCTTCAAAAGCATGGAAGGATAAGGGATAATTTAAGTCAGTTGTATGCTAAGGACATCACTCCTGATGATAAACAGGAGCTTGATGAGGCTCTACAGAGGGAGATCCAAGCTGCCTTCCGCACTGATGAAATCAAGAGGACCCCTCCAACCCCTCAAGATGAGATGAGAGCCGGGATGAGCTATTTCCACGAAACAATTTGGAAGGGTGTACCCCAATTTCTGCGCCGTGTTGATACAGCTTTGAAGAGTATAGGGATTAATGAACGTGTCCCTTATAATGCTCCTCTTATTCAATTTTCTTCTTGGATGGGTGGTGATCGTGATGGCAATCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCCGCTAAATTGTACTATTCCATGATAGATGATCTTATGTTTGAGTTGTCAATGTGGCGCTGCAACGACGAGCTACGTGTCCGTGCAGATGAAATTAACAGGTCTTCTAAGAAAGATGCTGTTGCAAAACACTATATAGAGTTTTGGAAAGTCATACCTGCAAGTGAACCATATCGTGTGGTACTGGGTGAAGTAAGGGATAAACTCTACCGGACTCGTGAGCGTTCTAGTCATCTACTAGCTCAAGGGTACTCTGACATTCCAGAGGAGGAAACTTTTACCAATGTTGAGGAGTTCTTGGAACCTCTTGAACTGTGTTATAGATCACTCTGTGCTTGTGGTGACCGGGCAATTGCTGATGGAACCCTTCTTGATTTCTTGAGGCAAGTCTCCACCTTTGGACTATCACTTGTGAGGCTTGACATCAGGCAAGAGTCAGACCGTCATACTGATGTGTTGGATGCAATTACGACACATTTAGGAATCGGTTCCTACCAGGAATGGTCTGAAGAAAAACGGCAAGAGTGGCTTTTGTCTGAACTGAGTGGAAAACGACCACTGTTTGGACCCGACCTTCCCCAAACTGAAGAAGTTAAAGATGTTTTGGACACATTGCGTGTCATATCAGAACTACCCCCAGACAACTTTGGAGCATATATCATATCAATGGCAACTACACCATCTGATGTGCTTGCAGTTGAACTTCTGCAACGTGAATGCCATGTCAAGCATCCATTAAGAGTTGTCCCGTTGTTTGAGAAGCTTGCAGATCTTGAGGCTGCTCCTGCTGCTCTGGCTCGGTTGTTCTCAATAGAATGGTATAGAAATAGGATCAATGGGAAGCAAGAAGTCATGATTGGGTATTCAGATTCGGGAAAAGATGCTGGAAGGTTCACTGCAGCATGGCAGCTATATAAGGCTCAAGAGCAGCTTATAGAAGTAGCCAAGAAATTTGGGGTTAAGCTAACCATGTTCCACGGTCGTGGTGGAACTGTCGGAAGAGGAGGTGGCCCCACTCACCTTGCTATCCTGTCTCAACCTCCAGAGACAATCCGCGGATCACTTCGTGTTACAGTCCAAGGTGAAGTTATTGAGAAGTCATTTGGAGAGCAGAATTTGTGCTTTAGAACACTTCAACGTTACACTGCTGCTACTCTAGAACATGGAATGCATCCTCCCATTTCTCCCAAACCTGAATGGCGTGCTTTGATGGATCATATGGCTGGCATTGCTACAGAAGAATACCGTTCTATTGTATTCCAAGAACCTCGCTTTGTTGAATATTTCCGTCTGGCTACACCAGAGTTGGAGTATGGCCGGATGAACATTGGAAGTCGACCAGCAAAGCGCAGACCAACTGGAGGTATCGAGACACTCCGTGCTATTCCTTGGATCTTTGCCTGGACACAAACAAGGTTTCATCTTCCAGTATGGCTAGGCTTTGGGGCAGCATTCAAACAAGTTATTGAAAAGGATGTTAGAAATCTTCACATGTTGCAAGTGATGTACAATCAATGGCCTTTCTTCAGGGTCACTATTGATTTAGTGGAAATGGTGTTTGCCAAGGGTGACCCAGGTATAGCTGCTTTGTATGATAGACTTCTTGTTTCAGAAGATCTGTGGCCATTTGGAGAAAAGTTGAGGACCATGTTTGAAGAAACTAAGGAACTCCTCCTTCAGGTGGCTGCCCATAAGGATCTTCTTGAAGGAGACCCTTACTTGAAGCAAAGAATCCGCTTGCGTGACTCTTACATCACTACCCTTAATGTTTGCCAAGCTTACACGTTGAAACGTATTCGTGATCCGAACTATAATGTCACGCTGCGCCCTCACATCTCGAAAGAGTCCCTAGAGATAAGTAAAGCTGCTGATGAACTTGTAACATTAAACCCAACAAGTGAATATGCCCCTGGTTTGGAAGACACCCTCATTCTCACCATGAAGGGTGTTGCTGCTGGACTGCAGAACACCGGTTAA 2904 0.4435 MPNKNLEKMASIDAQLRQLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEEKHDPAKLEKLGNLITSLDAGDSIVFAKAFSHMLNLANLAEEVQISHRRRNKLKKGDFADENNATTESDIEETFKRLVGELKKSPQEVFDALKNQTVDLVFTAHPTQSVRRSVLQKHGRIRDNLSQLYAKDITPDDKQELDEALQREIQAAFRTDEIKRTPPTPQDEMRAGMSYFHETIWKGVPQFLRRVDTALKSIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAAKLYYSMIDDLMFELSMWRCNDELRVRADEINRSSKKDAVAKHYIEFWKVIPASEPYRVVLGEVRDKLYRTRERSSHLLAQGYSDIPEEETFTNVEEFLEPLELCYRSLCACGDRAIADGTLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITTHLGIGSYQEWSEEKRQEWLLSELSGKRPLFGPDLPQTEEVKDVLDTLRVISELPPDNFGAYIISMATTPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFSIEWYRNRINGKQEVMIGYSDSGKDAGRFTAAWQLYKAQEQLIEVAKKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIRGSLRVTVQGEVIEKSFGEQNLCFRTLQRYTAATLEHGMHPPISPKPEWRALMDHMAGIATEEYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPAKRRPTGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKQVIEKDVRNLHMLQVMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEDLWPFGEKLRTMFEETKELLLQVAAHKDLLEGDPYLKQRIRLRDSYITTLNVCQAYTLKRIRDPNYNVTLRPHISKESLEISKAADELVTLNPTSEYAPGLEDTLILTMKGVAAGLQNTG 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0549 967 Gene3D Phosphoenolpyruvate/pyruvate domain 308 445 - -
Lal9g0549 967 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 967 - -
Lal9g0549 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 593 605 IPR033129 -
Lal9g0549 967 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lal9g0549 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Lal9g0549 967 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 967 IPR015813 GO:0003824
Lal9g0549 967 Pfam Phosphoenolpyruvate carboxylase 36 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lal9g0549 967 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lal9g0549 967 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lal9g0549 967 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lal9g0549 967 PRINTS Phosphoenolpyruvate carboxylase signature 442 462 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lal9g0549 967 PRINTS Phosphoenolpyruvate carboxylase signature 591 611 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lal9g0549 967 PRINTS Phosphoenolpyruvate carboxylase signature 633 662 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lal9g0549 967 PRINTS Phosphoenolpyruvate carboxylase signature 765 791 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lal9g0549 967 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 967 IPR022805 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0549 Lal-Chr9 3715922 3721726 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0549 K01595 - gmx:100820574 1774.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0549 9 3715922 3721726 Lal9g0549 9 3715922 3721726 ECH
Lal1g0602 1 3846060 3851976 Lal9g0549 9 3715922 3721726 LSH
Lal2g0632 2 3757259 3763295 Lal9g0549 9 3715922 3721726 LSH
Lal20g0374 20 2993657 2999975 Lal9g0549 9 3715922 3721726 PCT
Lal11g1464 11 17927097 17933073 Lal9g0549 9 3715922 3721726 PCT
Lal9g0549 9 3715922 3721726 Lal10g0663 10 14448718 14455760 PCT
Lal9g0549 9 3715922 3721726 Lal8g0735 8 5250494 5256447 PCT