LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g0602	ATGGCGAACAGGAACTTGGAAAAGATGGCATCTATTGATGCGCAGCTTCGGCAACTAGCTCCAGCCAAAGTGAGTGAGGATGACAAACTTGTTGAGTATGATGCTCTTCTCCTGGATCGGTTTCTTGATATTCTTCAGGATTTACATGGAGAAGATATGAAGGAAACGGTTCAAGAAATATATGAGCTTTCTGCTGAATATGAAGGAAAGCATGATCCCAAAAAACTAGAAGAACTTGGAAATCTAATAACTAGTTTGGATGCTGGAGACTCTATTGTTTTTGCCAAGGCCTTTTCCCACATGCTTAACTTGGCCAACTTAGCTGAAGAGGTCCAGATTGCTCATCGCCGAAGAAACAAGTTGAAGAAGGGGGATTTTGCTGATGAGAATAATGCAACTACTGAATCAGATATTGAAGAAACTTTCAAGAGACTTGTAAGGGAATTGAAGAAGTCTCCTCAGGAAGTTTTTGATGCACTGAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCTACTCAATCAATTCGTAGATCTTTGCTTCAAAAGCATGGAAGGATACGAAATAATTTAACTGAATTGTATGCCAAGGATATTACCCCTGATGATAAGCAGGAGCTTGATGAGGCTCTACAGAGGGAGATCCAAGCTGCCTTCCGCACTGATGAAATCAGGAGGACCCCTCCAACCCCTCAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGAAGGGTGTACCCCAATTTCTCCGTCGTGTTGATACAGCTTTGAAGAATATAGGGATTAATGAACGTGTCCCTTATAATGCTCCTCTTATTCAATTTTCTTCTTGGATGGGTGGCGATCGTGATGGCAATCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTACTATTCCATGATAGATGATCTTATGTTTGAATTGTCAATGTGGCGCTGCAATGATGAGCTACGTGTTCGTGCAGATGAAATTAGCAGGTCTTCAAAGAAAGATGCTGTTGCAAAACACTATATAGAATTTTGGAAAATTATACCCTCAAGTGAACCATATCGTGTGATACTGGGTGACGTCAGGGATAGGCTCTACCGGACACGTGAGCGTTCTCGCCATTTGCTAGCTCAAGGGTACTCTGACATTCCAGAGGAAGAAACTTTAACCAGTGTTGAGGAGTTCTTGGAACCTCTTGAATTGTGTTATAGGTCACTCTGTGTTTGTGGTGATCGGGCAATTGCTGACGGAACCCTTCTCGATTTCTTGAGGCAAGTCTCCACTTTTGGATTGTCACTAGTGAGACTTGATATCAGGCAAGAGTCAGACCGTCATACTGATGTGTTGGATGCCATTACTCAACACCTAGGAATCGGCTCATACCAGGAGTGGTCTGAAGAAAAACGCCAGCAGTGGCTCTTGTCTGAACTGAGTGGCAAACGACCACTGTTCGGACCCGACCTTCCCCAAACTGAAGAAATTAAAGATGTTTTGGACACATTGCATGTCATAGCAGAACTACCACCAGACAACTTTGGAGCATATATCATATCAATGGCAACTGCAGCATCTGATGTGCTTGCAGTTGAACTTCTTCAACGTGAGTGCCGTATCAAGCATCCATTAAGAGTTGTCCCATTGTTTGAGAAGCTAGCAGATCTTGAGTCTGCTCCGGCTGCCTTGGCTCGGTTGTTCTCAATAGACTGGTATAGAAATAGGATCAATGGGAAGCAAGAAGTCATGATTGGATATTCGGATTCTGGAAAAGATGCTGGAAGGTTCTCTGCAGCATGGCAGCTATATAAAGCTCAAGAGGAGCTTATAGAAGTAGCCAAGAAATTTGGTGTTAAGCTAACCATGTTCCACGGTCGTGGTGGAACTGTTGGAAGAGGTGGTGGTCCCACTCACCTTGCTATCCTGTCTCAACCTCCAGAGACAATTCACGGATCACTTCGTGTAACAGTCCAAGGTGAAGTTATTGAGCAATCATTTGGAGAGCAGCACTTGTGCTTTAGAACACTTCAACGTTACACTGCTGCTACTCTAGAACATGGAATGCATCCTCCAATTTCTCCTAAACCTGAATGGCGTGCTTTAATGGATCAGATGGCTGTCATTGCTACAGAGGAATACCGTTCTATTGTATTCCAAGAACCTCGCTTTGTTGAGTATTTCCGCCTGGCTACACCAGAGTTGGAGTATGGCCGGATGAATATTGGAAGTCGACCAGCAAAGCGAAGGCCAACTGGAGGTATTGAGACACTCCGTGCTATTCCTTGGATCTTCGCCTGGACACAAACAAGGTTTCATCTCCCGGTATGGCTAGGCTTTGGGGCAGCATTCAGACAAGTTATTACGAAGGATGTTAGGAATCTTAATATGCTGCAAGAGATGTACAATCAATGGCCTTTTTTTAGGGTCACTATTGATTTAGTGGAGATGGTGTTTGCCAAGGGTGACCCTGGGATAGCGGCTTTGTATGATAGGCTTCTTGTTTCAGAAGATCTGTGGTCATTTGGGGAGCAGTTGAGGACCAAGTTTGAAGAAACTAAGAAACTCCTCCTTCAGGTGGCTGCCCATAAAGATCTTCTTGAAGGAGACCCTTACTTGAAGCAAAGACTCCGATTGCGTGATTCTTACATCACTACCCTTAATGTTTGCCAAGCTTACACATTGAAACGTATCCGTGATCCGAACTACGATGTGAAGTTGCGCCCCCACATCTCGAAAGAGTGTATCGAGATAAGTAAAGCTGCTGATGAACTTATAACACTGAACCCAACAAGTGAATATGCCCCTGGTTTGGAAGACACCCTCATCCTCACCATGAAGGGTATTGCTGCTGGACTTCAGAACACCGGTTAA	2904	0.4404	MANRNLEKMASIDAQLRQLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDMKETVQEIYELSAEYEGKHDPKKLEELGNLITSLDAGDSIVFAKAFSHMLNLANLAEEVQIAHRRRNKLKKGDFADENNATTESDIEETFKRLVRELKKSPQEVFDALKNQTVDLVLTAHPTQSIRRSLLQKHGRIRNNLTELYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPQFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSMIDDLMFELSMWRCNDELRVRADEISRSSKKDAVAKHYIEFWKIIPSSEPYRVILGDVRDRLYRTRERSRHLLAQGYSDIPEEETLTSVEEFLEPLELCYRSLCVCGDRAIADGTLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITQHLGIGSYQEWSEEKRQQWLLSELSGKRPLFGPDLPQTEEIKDVLDTLHVIAELPPDNFGAYIISMATAASDVLAVELLQRECRIKHPLRVVPLFEKLADLESAPAALARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIEVAKKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRYTAATLEHGMHPPISPKPEWRALMDQMAVIATEEYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPAKRRPTGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFRQVITKDVRNLNMLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEDLWSFGEQLRTKFEETKKLLLQVAAHKDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYDVKLRPHISKECIEISKAADELITLNPTSEYAPGLEDTLILTMKGIAAGLQNTG	967

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g0602	967	Gene3D	Phosphoenolpyruvate/pyruvate domain	308	445	-	-
	Lal1g0602	967	Pfam	Phosphoenolpyruvate carboxylase	36	967	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Lal1g0602	967	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 2.	593	605	IPR033129	-
	Lal1g0602	967	Coils	Coil	104	124	-	-
	Lal1g0602	967	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 1.	168	179	IPR018129	-
	Lal1g0602	967	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	33	967	IPR015813	GO:0003824
	Lal1g0602	967	PRINTS	Phosphoenolpyruvate carboxylase signature	167	180	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Lal1g0602	967	PRINTS	Phosphoenolpyruvate carboxylase signature	220	236	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Lal1g0602	967	PRINTS	Phosphoenolpyruvate carboxylase signature	280	295	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Lal1g0602	967	PRINTS	Phosphoenolpyruvate carboxylase signature	442	462	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Lal1g0602	967	PRINTS	Phosphoenolpyruvate carboxylase signature	591	611	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Lal1g0602	967	PRINTS	Phosphoenolpyruvate carboxylase signature	633	662	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Lal1g0602	967	PRINTS	Phosphoenolpyruvate carboxylase signature	765	791	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Lal1g0602	967	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	967	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Lal1g0602	967	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	967	-	-
	Lal1g0602	967	Hamap	Phosphoenolpyruvate carboxylase [ppc].	23	967	IPR022805	GO:0006099\|GO:0008964\|GO:0015977

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g0602	Lal-Chr1	3846060	3851976	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g0602	K01595		-	gmx:100820574	1818.9

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g0602	1	3846060	3851976	Lal1g0602	1	3846060	3851976	ECH
	Lal1g0602	1	3846060	3851976	Lal2g0632	2	3757259	3763295	LSH
	Lal1g0602	1	3846060	3851976	Lal9g0549	9	3715922	3721726	LSH
	Lal20g0374	20	2993657	2999975	Lal1g0602	1	3846060	3851976	PCT
	Lal11g1464	11	17927097	17933073	Lal1g0602	1	3846060	3851976	PCT
	Lal1g0602	1	3846060	3851976	Lal10g0663	10	14448718	14455760	PCT
	Lal1g0602	1	3846060	3851976	Lal8g0735	8	5250494	5256447	PCT