Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0400 ATGGGGACAAGATCTTCAAAACGAAAAAACATTGCACAAATATTAGATAATGAAGCTAAATCAGCCATTGATCGTATCACTGATCTCCCTGATGCTGTTCTTCATCACATACTTTTTCTCCTTCCAATCAAATGTGTAGCACAAATGAGTATTCTTTCTAAGAGATGGAAATTTCTTTGGTCCACTTTCCCAGACCTTGACTTCACCACTCTTAACCCATTTGAAATTTCTTCCAAAAATCTTAAATTTATGAACTATGACAAACATAGAAATCATCCCTTGGATACAGCACCAATGGATTTCATTTCCCAAGTTTTTTCCATTCGTGACAAGCATTCAGACATTAGGATTCTTTGTTTTCGTGCCCGTTTGAGTTTTTCTCGACTAAACAGTTTGATTCGTAGTGCAATTAGGCATAATGTTAAAGAACTTGACATTGAAGCCACTACTTCTGTTACCACAGATGATTATTTCAACTTTCCTAGATGTGTTATAGGAAGTGAATCTTTAAGGGTCTTAAAATTAAAATCAGGTTTTCGTTTACCACCATCATCTATTATGAGGGATGGGTTCCAATCTCTACATACATTGTCTCTTTCCCTAGTCATTTTGTATAATCAGCCTAATCTCTCTGATTTGTTCTCTGAATCATCATTTCCTTTGTTGAAAAAATTGCACCTAGATATGTGCTTTGGATTGAAATATCTCCATGTTGGTTGCCGAGGTCTTGAAGATTTGAGCTTAGAAAAATGTTTTCAGCTACAAGGTTTGGATATCTCATGTGCAAAACTAGCAAAAATGAGAGTAACAAGTTGTTTTCATGCCTATAGTAAAAAAAGTTGGGTAAGAATCAATGCCCCAAAGCTTGAACATTTGTTTTGGCAATTTAATGCTGTTAGTGACACTACTATTTTTGAGCCTTCAAATTTCTTACTTGAGGCCTATGTTGGTCTCTTCATACTGAATAGAGCTAATAGCATGGGTAAGGTTCAAAGTGTCAATGGTTTCTTGTCTGGGCTATCTCATGCTGGTTCACTTATTCTTGAAAGCCAAACCTTTGAGATTCTATCAAACAATAACTTCTATATTCAGCCATTTGGTAATCTAAAATCATTGGAGCTGCATACTGGTTTCAAAAAAAGCAATGTCCAAGGATTAGCATGCCTCTTCAGGAGTTTTCCAACACTTCATACTCTGATTCTCAAGATCACTAATGATTGTAAGATTGAAAGAAAACAATGGAATAGGGACTTATGGGACATGAGTAGCACGGAAGAAGAACAGTATTGGGAATCTCAGATACCAAGTTTGATGTCATTTCTACAACACTTGAGATTGGTGAAAATTCATGGGTTTCTAGATTGTGAGAATGAAGTTACACTTGCAAAGTTTCTTCTCAAACATGGTAAGGGCTTAGAAGAAATGACATTATGTGCAGGAGATTGCAATGATAGAGATACTCTTAGAAGACAAAAAATAAGGTCGCAAATGATGGGATTTTCTTCGGCTTGTTCTAATGCAAAATTATCATTTCAGTAA 1539 0.3561 MGTRSSKRKNIAQILDNEAKSAIDRITDLPDAVLHHILFLLPIKCVAQMSILSKRWKFLWSTFPDLDFTTLNPFEISSKNLKFMNYDKHRNHPLDTAPMDFISQVFSIRDKHSDIRILCFRARLSFSRLNSLIRSAIRHNVKELDIEATTSVTTDDYFNFPRCVIGSESLRVLKLKSGFRLPPSSIMRDGFQSLHTLSLSLVILYNQPNLSDLFSESSFPLLKKLHLDMCFGLKYLHVGCRGLEDLSLEKCFQLQGLDISCAKLAKMRVTSCFHAYSKKSWVRINAPKLEHLFWQFNAVSDTTIFEPSNFLLEAYVGLFILNRANSMGKVQSVNGFLSGLSHAGSLILESQTFEILSNNNFYIQPFGNLKSLELHTGFKKSNVQGLACLFRSFPTLHTLILKITNDCKIERKQWNRDLWDMSSTEEEQYWESQIPSLMSFLQHLRLVKIHGFLDCENEVTLAKFLLKHGKGLEEMTLCAGDCNDRDTLRRQKIRSQMMGFSSACSNAKLSFQ 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0400 512 SUPERFAMILY RNI-like 124 451 - -
Lal9g0400 512 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 20 457 - -
Lal9g0400 512 PANTHER F-BOX PROTEIN-LIKE 20 457 - -
Lal9g0400 512 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Lal9g0400 512 Pfam F-box domain 27 61 IPR001810 GO:0005515
Lal9g0400 512 Gene3D Ribonuclease Inhibitor 20 306 IPR032675 -
Lal9g0400 512 SUPERFAMILY F-box domain 20 74 IPR036047 GO:0005515
Lal9g0400 512 SMART 9598neu4hmm 438 512 IPR006566 -
Lal9g0400 512 Pfam FBD 440 477 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0400 Lal-Chr9 2657742 2659861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0400 24 402 EF-hand Containing Proteins AT5G41840 24.700 8.23e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0400 - - ahf:114927451 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0400 9 2657742 2659861 Lal9g0400 9 2657742 2659861 ECH
Lal2g0433 2 2589643 2591668 Lal9g0400 9 2657742 2659861 LSH