Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0396 ATGGAACCTTGCTGCAATCTTGAAGTGGATGTAAATGGAGAAGAAACTTTCATGGTGGACAAGACAATTATTGCTCAGTACTCAAGAAAATTTGCTAAATTATTTGGAAAATCTAGTGGAGCCAGAGGGAAACTGAAAGTAATATTCAATGATTTTCCAGGAGGTGCAAAAGGTTTTGAGCATATGTTAAGATTCTGTTATAACAATGGAACAACTGATATAACTCCCTCCAATTTGTTACTCACACGTTGTGCTGCTGAATTCATGGAAATGAAGGAATCTGTGGCTGGTTTTTCTAACTTATTGGAACAAACAGAAAAATCACTTCAAGAGATTAACTTTTGGACATGGCCAGGCCTTTTGATTGCATTGAAGCAGTGCCAGAATTTATCATTAGCTGCAAATTCTTCTATTGTGCTAGAGAAATGCTTGGATGCCTTAGTGGGGAGGCTAGTGTTGGCAAGTGAAACAAGCCCTTGTCCATCAACTTGTTCTACTGATAGCTCTGGAATTCGATTTTCATGCGACTCTAAAAGTACTGAGAGTATAAAGACAAATTCCGCTCGTTTAACTTCGTGGTTTGAAGATCTTCTGTTTTTGAGTCCCTTGTTGGTTGCAATGTTGGTAAAGTCGATGGTTTTGCGTAAGTTAGACCATGTTGTCATTAGCAGGTTTCTGCTCTATTATCAGAAGGCGAAGTTTTCCAATGCTACTACTGATGAGAAATGCAAGATTATAGAAATGGTCATTGATATGCATTACAACATGGATCATAATTATGTTTCTTGCAAGACTTTATTTGGGATTCTTCGGGTTACTTTGAATTTGAATATTAGTAAATGTAGCCGGAAAACATTGGAGAATATGATTGGTTCTCATTTGGATCAAGCAACCTTGGACAATTTGCTTGTTCCATCTCCCTATGGAATAAGCTACTTATATGATGTGAACCTTGTTCTGAGATTTTTGAAAGCATTCCTTCGCAGAGGAACTGGTGTAGTCGCTCCCATTCAGATGAGGAAAGTTGCTACCTTAATAGATTTGTATATAGCAGAAATAGCTCCTGATCCTTGCTTAAAAGCTTTCAAGTTCTTGGCTATTGCCACAGCACTTCCAGATTCTGCTAGAGACTCCTATGATGAGCTCTATCATGCAGTGAACATGTATCTAGAGGTACATGATCACTTGTCACAAGAAGAAAGGGTGAAGATTTGTTGCGGTTTAAATTACGAGAAGCTTTCACCTCAAGCTTGCCTACACCTTTCTCAGAACTCAAATTTTCCTTCAAAATCTGCAGTTCAGGCTCTCATCTCTCAGAAATCGAAGCTCGACAACTTACTCCGTGCTACTCCTAGTACAACTCCATTCAACAATTCGCCTTGCGGTTCAAGTGGTGCTGCTCAAAGAGGAAGGAAAGAAAAAATTAGTGAACAGGTTGTATTAAATGATGGAAACATTGATATTTCAGTTGATAATGAGAAACTCAGAGCACATTTGCAAGGAATGCAATGCAGGGTTACCGAACTCGAGAAAATCTGTCTGAAAATGCAATCTGAGATGGCAAAAATCACCAAATCAAAAGTATCAGGTTGTAGTAATGCAAGATCCTTGCCTAAACTCTGTTCATGA 1629 0.3855 MEPCCNLEVDVNGEETFMVDKTIIAQYSRKFAKLFGKSSGARGKLKVIFNDFPGGAKGFEHMLRFCYNNGTTDITPSNLLLTRCAAEFMEMKESVAGFSNLLEQTEKSLQEINFWTWPGLLIALKQCQNLSLAANSSIVLEKCLDALVGRLVLASETSPCPSTCSTDSSGIRFSCDSKSTESIKTNSARLTSWFEDLLFLSPLLVAMLVKSMVLRKLDHVVISRFLLYYQKAKFSNATTDEKCKIIEMVIDMHYNMDHNYVSCKTLFGILRVTLNLNISKCSRKTLENMIGSHLDQATLDNLLVPSPYGISYLYDVNLVLRFLKAFLRRGTGVVAPIQMRKVATLIDLYIAEIAPDPCLKAFKFLAIATALPDSARDSYDELYHAVNMYLEVHDHLSQEERVKICCGLNYEKLSPQACLHLSQNSNFPSKSAVQALISQKSKLDNLLRATPSTTPFNNSPCGSSGAAQRGRKEKISEQVVLNDGNIDISVDNEKLRAHLQGMQCRVTELEKICLKMQSEMAKITKSKVSGCSNARSLPKLCS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0396 542 Pfam NPH3 family 192 418 IPR027356 -
Lal9g0396 542 SMART BTB_4 5 106 IPR000210 GO:0005515
Lal9g0396 542 ProSiteProfiles BTB domain profile. 5 69 IPR000210 GO:0005515
Lal9g0396 542 Coils Coil 492 512 - -
Lal9g0396 542 ProSiteProfiles NPH3 domain profile. 191 442 IPR027356 -
Lal9g0396 542 Gene3D Potassium Channel Kv1.1; Chain A 2 114 IPR011333 -
Lal9g0396 542 PANTHER OS12G0117600 PROTEIN 11 542 IPR043454 -
Lal9g0396 542 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 11 542 - -
Lal9g0396 542 MobiDBLite consensus disorder prediction 454 474 - -
Lal9g0396 542 Pfam BTB/POZ domain 5 104 IPR000210 GO:0005515
Lal9g0396 542 SUPERFAMILY POZ domain 4 96 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0396 Lal-Chr9 2632278 2635613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0396 30 522 EF-hand Containing Proteins AT3G44820 26.882 2.34e-51 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0396 - - gmx:100784792 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0396 9 2632278 2635613 Lal9g0396 9 2632278 2635613 ECH
Lal2g0430 2 2574832 2578209 Lal9g0396 9 2632278 2635613 LSH