Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0371 ATGGGTCTGAACAGGATACATATGGCCCATTGGTCTGAACGTTCCATTTTCAAATTGGCAAATCCAAAGTCACCCATTTCAGCATCTTCTTTGAAGCTCAAAACCCACTTCTCAAAACCTCTTTTTTATCCTTCATTTGCTTCCCCACACTTGAACTTCACCACCAAGAAACAGTTCTTACATGGTAAAAACTATAGCAGATGCAAACATGCAAAAAGATTTGATTTTAGGACATGGGCTATTGCTGGATTTGATTATGGGAGCTTTGAGGGTCCTCAGTCCGTGCTTGAAGCTGTTGCAGTTTTAACAGCAATCATCGTTGTTCATGAGAGTGGTCACTTCCTTGCAGTTGGGTTTGGTCCAATTTTAGTTAAGTTCAATGCAAACAATGTAGAATATTCTATTAGAGCTTTTCCTCTTGGTGGCTTTGTCGGGTTTCCTGATAATGATCCAGAGAGTGATATTCCTATTGATGATAAAAATTTGCTTAAGAACAGACCAATATTGGATAGAGTCATTGTGGTTTCTGCTGGTGTTATTGCTAATATCATTTTTGCAATTGTAATTGTCTTTGTTCAAGTCATTGTTGTTGGTTTACCTGTGCAAGAGGTTTTTCCTGGTGTGATTGTTCCAGAAGTTAAACCCTTCTCAGCTGCTTCTAGAGATGGTTTGCTTCCTGGTGATGTGATCCTTGAGGTCAATGGAAGTGAGTTTCCTAAACCAGGTCCTAGTGCTGTCTCTGAAGTTGTTGATGTCATCAAGAAAAACCCTAAGAGATATATTTTGCTTAAGGTTAAGAGGGAGGAGCAGAATTTTGAAATCGGGGTCACTCCGGATGAGAATTATGATAGGACTGGTAAGATTGGAGTTCAGCTATCACCAAATGTTAAGATAGATAAGGTTAGGCCAAAGAATCTGATGGAAGCTATAAACTTCACAGGAAAAGAATTTTGGGGTCTTTCATCAAATGTTTTAGATGGCTTAAAGCAGACATTTGTTAACTTCTCCCAGACAGCTAGTAAGGTTTCGGGTCCTGTAGCGATTATTGCTGTTGGTGCCGAAGTTGCACAGTCAAACATTGATGCTCTCTACCAATTTGAGGCCATACTCAATATTAACCTTGCGGTTATAAACCTTCTTCCTTTACCTGCATTGGACGGTGGTACATTGGCACTGATCCTCATTGAGGCTGCCAGGGGTGGGAGAAAGCTGCCTCTTGAAATGGAGCAAAGGATCATGTCATCAGGAGTTATGCTTGTTGTACTTCTAGGCTTGTTCCTTATTGTTCGTGACACCTTAAACCTTGATTTTATCAAAGAGATATTGTAA 1329 0.4011 MGLNRIHMAHWSERSIFKLANPKSPISASSLKLKTHFSKPLFYPSFASPHLNFTTKKQFLHGKNYSRCKHAKRFDFRTWAIAGFDYGSFEGPQSVLEAVAVLTAIIVVHESGHFLAVGFGPILVKFNANNVEYSIRAFPLGGFVGFPDNDPESDIPIDDKNLLKNRPILDRVIVVSAGVIANIIFAIVIVFVQVIVVGLPVQEVFPGVIVPEVKPFSAASRDGLLPGDVILEVNGSEFPKPGPSAVSEVVDVIKKNPKRYILLKVKREEQNFEIGVTPDENYDRTGKIGVQLSPNVKIDKVRPKNLMEAINFTGKEFWGLSSNVLDGLKQTFVNFSQTASKVSGPVAIIAVGAEVAQSNIDALYQFEAILNINLAVINLLPLPALDGGTLALILIEAARGGRKLPLEMEQRIMSSGVMLVVLLGLFLIVRDTLNLDFIKEIL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0371 442 CDD PDZ_metalloprotease 198 278 - -
Lal9g0371 442 Pfam Peptidase family M50 99 423 IPR008915 GO:0004222|GO:0006508
Lal9g0371 442 SUPERFAMILY PDZ domain-like 167 270 IPR036034 GO:0005515
Lal9g0371 442 Gene3D - 200 293 IPR036034 GO:0005515
Lal9g0371 442 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 58 442 IPR004387 GO:0004222|GO:0006508|GO:0016021
Lal9g0371 442 SMART pdz_new 195 269 IPR001478 GO:0005515
Lal9g0371 442 CDD S2P-M50_PDZ_RseP-like 95 434 - -
Lal9g0371 442 Pfam PDZ domain 210 267 IPR041489 -
Lal9g0371 442 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 58 442 - -
Lal9g0371 442 ProSiteProfiles PDZ domain profile. 197 268 IPR001478 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0371 Lal-Chr9 2467525 2469179 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0371 - - lang:109351773 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0371 9 2467525 2469179 Lal9g0371 9 2467525 2469179 ECH
Lal2g0408 2 2451258 2452622 Lal9g0371 9 2467525 2469179 LSH