Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0408 ATGGTCATATACCTCTCTCCCTCTCCACCTTCACATTCCAGTTCCATCATCAAATTGACAAATTCTAAGTCACCCATTTCAACACCTTCCTTCAAGCTCAAAACCCACTTCTCAAAATCACTTTTTACTCCTTCGTTTGCTTCCCCAAACTTGAACTTCACCACCAAGAAACAGTTTTTACATGGCAACAATAATAGTAGATTCAAACATGCAAAAAAATATGATTTTAGGACATGGGCTATTCCTGGATTTGATTATGGAAACTTTGAGGGTCCTCAGTCTGTGATTGAAGCTGTTGCAGTTTTAACAGCAATCATTGTTGTTCATGAGAGTGGTCATTTCCTTGCTGCTTCTCTCCAAGGAATCCATGTGAGTAAATTTGCAATTGGGTTTGGTCCAATTTTAGCTAAGTTCAATGCAAACAATGTAGAGTATTCCATTAGAGCTTTTCCTCTTGGTGGCTTTGTTGGATTTCCTGATAACGATCCAGATAGTGATATTCCTGCTGATGATAAAAACTTACTAAAGAACAGACCAATATTGGATAGAGTCATTGTGGTTTCAGCTGGTGTTATAGCTAATATCATTTTTGCAATTGTCATTGTCTTTGTTCAAGTCCTTGCTGTTGGTTTGCCTGTGCAAGAGGTTTTTCCTGGTGTAATTGTTCCTGAAGTTAAACCTTTTTCAGCTGCTTCTAGAGATGGTTTGCTTCCTGGTGATGTGATCCTTGAGGTCAATGGAAATGAGTTTCCAAAACCAGGTCCCAATGCAGTTTCTGAAGTCGTTGATGTCATTAAGAAGAACCCTAAGAGATATGTTTTGCTTAAGGTTAAGAGGGGAGAGCAAAACTTTGAAATAGGAGTCACCCCTGATGAGAATTATGATGGAAGTGGTAAAATTGGAGTTCAGCTATCACCAAATGTGAAGATAGGTAAGGTTAAGCCAAATAATATTGTTGAAGCTGTAAACTTTACTGGAAAAGAATTTTGGGGTCTGTCATCTAATGTTTTAGATGGCTTAAAGCAAACCTTTTTAAACTTCTCTCAGACAGCTGGTAAGGTTTCTGGTCCTGTAGCTATTATTGCTGTTGGTGCCGAAGTTGCGCGGTCAAACATGGATGGTCTCTACCAATTTGCCGCCATACTCAATATTAACCTTGCAGTTATAAACCTTCTTCCTTTACCTGCATTGGATGGGGGTACATTGGCACTGATCCTCATTGAAGCTGCCAGAGGTGGTAGAAAGCTGCCTCTTGAAGTGGAGCAACGGATCATGTCATCGGGAATTATGCTTGTTCTACTTCTGGGGTTATTCCTTATTGTCCGTGATACCTTAAACCTTGATTTTATCAAAGAGATATTGTAA 1365 0.3934 MVIYLSPSPPSHSSSIIKLTNSKSPISTPSFKLKTHFSKSLFTPSFASPNLNFTTKKQFLHGNNNSRFKHAKKYDFRTWAIPGFDYGNFEGPQSVIEAVAVLTAIIVVHESGHFLAASLQGIHVSKFAIGFGPILAKFNANNVEYSIRAFPLGGFVGFPDNDPDSDIPADDKNLLKNRPILDRVIVVSAGVIANIIFAIVIVFVQVLAVGLPVQEVFPGVIVPEVKPFSAASRDGLLPGDVILEVNGNEFPKPGPNAVSEVVDVIKKNPKRYVLLKVKRGEQNFEIGVTPDENYDGSGKIGVQLSPNVKIGKVKPNNIVEAVNFTGKEFWGLSSNVLDGLKQTFLNFSQTAGKVSGPVAIIAVGAEVARSNMDGLYQFAAILNINLAVINLLPLPALDGGTLALILIEAARGGRKLPLEVEQRIMSSGIMLVLLLGLFLIVRDTLNLDFIKEIL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0408 454 CDD PDZ_metalloprotease 207 290 - -
Lal2g0408 454 ProSiteProfiles PDZ domain profile. 209 280 IPR001478 GO:0005515
Lal2g0408 454 TIGRFAM TIGR00054: RIP metalloprotease RseP 97 251 IPR004387 GO:0004222|GO:0006508|GO:0016021
Lal2g0408 454 Gene3D - 212 305 IPR036034 GO:0005515
Lal2g0408 454 Pfam PDZ domain 222 279 IPR041489 -
Lal2g0408 454 SMART pdz_new 207 281 IPR001478 GO:0005515
Lal2g0408 454 SUPERFAMILY PDZ domain-like 179 282 IPR036034 GO:0005515
Lal2g0408 454 Pfam Peptidase family M50 99 435 IPR008915 GO:0004222|GO:0006508
Lal2g0408 454 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 27 454 - -
Lal2g0408 454 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 27 454 IPR004387 GO:0004222|GO:0006508|GO:0016021
Lal2g0408 454 CDD S2P-M50_PDZ_RseP-like 95 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0408 Lal-Chr2 2451258 2452622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0408 - - lang:109351773 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0408 2 2451258 2452622 Lal9g0371 9 2467525 2469179 LSH