Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0338 ATGGCGATCCTGTACGCCTTGGTGGCGAGAGGCACGGTGGTGCTAGCCGAGTTCAGCGCCGTCACTGGAAACCCGGGCGCCGTGGCCCGACGCTTACTTGAGAAGCTTCCGGCGGAGACTGACTCCAGGCTCTGTTTCTCTCAGGATCGCTATATCTTTCACATACTCCGATCCGATGGCCTCACCTATCTCTGTATGGCTAACGATGCATTTGGCAGGAGAATCCCTTTTTCATACTTGGAAGATATCCAAATGAGGTTTATGAAGAACTATGGTAGAGTTGCCAATTACGCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTCTTGCATCATCAAATGGAATTTTTTTCTAGCAATACTAGTACTGATACCCTCAGTCGTGTGAGGGGTGAAGTTGGTGAGGCAAGTGCATTTCAAAGAAAATTTTATCCCTCCTTACTTTGTCCTTCTCATGTATCCTCATCATTTTATTTATCTAGCATAGTAGAAACCCCTGTTTCTGTTGCCAATTCCTTTCTCCCCCGTGTTCTGGTGTTAGGAGCATGGCTCATCCCAAGAAGTGAAGATCGAATTGGATTTCAAGTTTTACGATGCCGTAATATACGAACTATCATGGTGGATAACATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAACTTCTTGTTGATAAGACATCAACAATGCAAGACAATGCATTTCACTTTAGGAAGCAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAATTTCAAACTCTTGGTGCTATTGACTGTCGTGATTGTTCTCTTTCTTTACCTTATAATTGCTGCTTGTTGTGGAGGCATCACTCTACCGTCATGTAGATCCTAA 861 0.4413 MAILYALVARGTVVLAEFSAVTGNPGAVARRLLEKLPAETDSRLCFSQDRYIFHILRSDGLTYLCMANDAFGRRIPFSYLEDIQMRFMKNYGRVANYAPAYAMNDEFSRVLHHQMEFFSSNTSTDTLSRVRGEVGEASAFQRKFYPSLLCPSHVSSSFYLSSIVETPVSVANSFLPRVLVLGAWLIPRSEDRIGFQVLRCRNIRTIMVDNIEKILERGDRIELLVDKTSTMQDNAFHFRKQSKRLRRALWMKNFKLLVLLTVVIVLFLYLIIAACCGGITLPSCRS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0338 286 Pfam Synaptobrevin 202 277 IPR042855 -
Lal9g0338 286 ProSitePatterns Synaptobrevin signature. 210 229 IPR001388 GO:0016021|GO:0016192
Lal9g0338 286 PRINTS Synaptobrevin signature 197 216 IPR001388 GO:0016021|GO:0016192
Lal9g0338 286 PRINTS Synaptobrevin signature 217 236 IPR001388 GO:0016021|GO:0016192
Lal9g0338 286 PRINTS Synaptobrevin signature 253 272 IPR001388 GO:0016021|GO:0016192
Lal9g0338 286 PANTHER SNARE PROTEINS 1 136 - -
Lal9g0338 286 PANTHER SNARE PROTEINS 201 285 - -
Lal9g0338 286 SUPERFAMILY SNARE-like 3 117 IPR011012 -
Lal9g0338 286 SMART Longin_2 28 110 IPR010908 -
Lal9g0338 286 Gene3D Longin domain 1 126 - -
Lal9g0338 286 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 136 - -
Lal9g0338 286 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 201 285 - -
Lal9g0338 286 CDD Longin 4 118 IPR010908 -
Lal9g0338 286 Gene3D - 199 275 - -
Lal9g0338 286 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Lal9g0338 286 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Lal9g0338 286 CDD R-SNARE 203 250 - -
Lal9g0338 286 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 192 252 IPR042855 -
Lal9g0338 286 SUPERFAMILY SNARE fusion complex 201 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0338 Lal-Chr9 2245189 2248505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0338 1 286 Miscellaneous Gene Families AT5G22360 57.143 5.64e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0338 K08515 - gmx:100808089 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0338 9 2245189 2248505 Lal9g0338 9 2245189 2248505 ECH
Lal2g0360 2 2148540 2151278 Lal9g0338 9 2245189 2248505 ECH
Lal2g0360 2 2148540 2151278 Lal9g0338 9 2245189 2248505 LSH