Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0360 ATGGCGATCCTGTACGCCTTGGTGGCGAGAGGCTCGGTGGTTCTAGCCGAGTTCAGCGCCGTCACCGGAAACACTGGCGCCGTGGCCCGCCGCTTACTCGAGAATCTTCCGGCGGAGGCCGAGTCCAGGCTCTGTTTCTCTCAGGACCGCTACATATTTCACATACTCCGATCCGATGGCCTCACTTATCTCTGTATGGCCAACGATACTTTTGGCAGGGGAATCCCTTTTTCATACTTGGAAGATATCCAAATGAGGTTTATGAAGAACTATAGGAGAGTGGCCAATTATGCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCACCAAATGGAATTTTTCTCCAATAATTCTAGTACCGACACCCTCAATCGTATACGAACTATCATGGTGGATAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAACTTCTTGTTGATAAGACATTAACAATGCAAGACAGTGCATTTCACTTTCGGAAGCAGTCAAAGCGCCTTCATAGAGCTATTTGGATGAAAAATTTCAAACTCCTGGTGCTAATGACACTCTTGATTGTTCTCTTTCTTTACCTTATAATTGCTGCTTGTTGTGGAGGCATCACTTTACCATCGTGTAGATCCTAA 642 0.4502 MAILYALVARGSVVLAEFSAVTGNTGAVARRLLENLPAEAESRLCFSQDRYIFHILRSDGLTYLCMANDTFGRGIPFSYLEDIQMRFMKNYRRVANYAPAYAMNDEFSRVLHHQMEFFSNNSSTDTLNRIRTIMVDNIEKILERGDRIELLVDKTLTMQDSAFHFRKQSKRLHRAIWMKNFKLLVLMTLLIVLFLYLIIAACCGGITLPSCRS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0360 213 SMART Longin_2 28 110 IPR010908 -
Lal2g0360 213 Pfam Synaptobrevin 125 204 IPR042855 -
Lal2g0360 213 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 212 - -
Lal2g0360 213 SUPERFAMILY SNARE fusion complex 125 181 - -
Lal2g0360 213 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 119 179 IPR042855 -
Lal2g0360 213 SUPERFAMILY SNARE-like 3 117 IPR011012 -
Lal2g0360 213 CDD R-SNARE 127 177 - -
Lal2g0360 213 PANTHER SNARE PROTEINS 1 212 - -
Lal2g0360 213 PRINTS Synaptobrevin signature 124 143 IPR001388 GO:0016021|GO:0016192
Lal2g0360 213 PRINTS Synaptobrevin signature 144 163 IPR001388 GO:0016021|GO:0016192
Lal2g0360 213 PRINTS Synaptobrevin signature 180 199 IPR001388 GO:0016021|GO:0016192
Lal2g0360 213 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Lal2g0360 213 CDD Longin 4 118 IPR010908 -
Lal2g0360 213 Gene3D - 123 202 - -
Lal2g0360 213 Gene3D Longin domain 1 122 - -
Lal2g0360 213 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0360 Lal-Chr2 2148540 2151278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0360 1 213 Miscellaneous Gene Families AT5G22360 78.281 1.82e-127 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0360 K08515 - gmx:100780787 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0360 2 2148540 2151278 Lal2g0360 2 2148540 2151278 ECH
Lal2g0360 2 2148540 2151278 Lal9g0338 9 2245189 2248505 ECH
Lal2g0360 2 2148540 2151278 Lal9g0338 9 2245189 2248505 LSH