Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0334 ATGGCGGTGAGGGCAACGGTTTCGCGATTTCCGATCGATACCGACGCACGCGAGGGCTCAGGCTTACTATGGGGAGTAACCGTCACTCCCTTCGCCGCCGTCGACGAGAACGGTCATTCTCCGGCTTACGGATCCGGCGGCGACATCCTCCCCCGATGCGAGAACTGCTATGGCTATTTCAACACCTTTTGTGAGCTTGAACAGTGGTCCTGGTCTTGCTCTCTCTGCGGTTCTGTCAACGGCCTATCCTCTGATGCTATCGAACGCTACTCTCGCCCTCAATCCTGCGCCGAGATGATGTCATCATTGGTAGATCTCGAATTGCCACAAGAAGAATCAGCGGATGGAGGAGGAGCAATGCAAGCATGTCCAGTATATGTTGCTGCTGTTGACTTGTCCTCTTCAGAGGAGTTTCTGGAACTCACTAAAAGTGCATTGCTGGCAGCTTTGGAAGCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACCTTCAGCCACAAACTAGGGCTGTATGATGTTCAAGGTCCTATACCTGTTGTCAAAAATGTTTTTATCCCTCCTGATGCAGAGGGGACCTTGCCAATTGAGCTTGAAGATGTCATGCCTTTGTTACAGTTTCTGGCTCCTGTGGAAACTTGTAAGGATCGTATTGCATCAGCACTTGAAACACTTAGACCAACATCTTCGTGGGAGAGAACCACAGCAGCAGGTCAAGGACTGGATGGTGTTCTGTTAGGTGGGCGTGGTTTTGGAGTAGCAATGGAAGCCCTTTGCAATTACCTAGGATCTGAATATGGGAACACCTTTGCTTTAGCTAGAGTTTTTGCCTTCTTGTCGGGCCCCCCTGATTATGGTGCGGGGCAGTTGGATACAAGACGATATGGTGAGCAGTATGCAAGCAAAGGAGAAGATGCAGATCGTGCTTTGCTTCCAGAGCAGACACCATTTTATAAAGATCTGGCTGCTGTTGCTGTTCAAGCAGGTGTCTGTGTGGACATTTTTGCTGTGACAAATGAGTACACAGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTGGGGGTTCCTTATTTTTATATACAAGCACTGAGGATTCAACCTTGCCTCAGGACATGTACCGAATGCTGAGTCGACCATATGCTTTTGGTTGTGTCCTCCGAATGAGAACCTCAACTGAATTTAAACCTGGAAATTCTTATGGTCACTTCTTCCCAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATACGCTTATGATTTTGTGTTTGAGAACAATGTTGGATTTTCAAGAACTCTGTCAGATGTTCCCACAATTCAGATTGCATTTCAGTATGCAGTTGTTTCTTCTCCCCAGGAACTTTCAGATTCAGAAGGCGTTTCTACAAGTAGAACCACACATTCCCTTAAACGTCGACTAAGGATCCGGACATTGCAGTTTGGCGTTGCTAAAAACATTCATGAACTTTATGACAGCTGTGATCCTGAAGTTATGCTATCATTGCTTGTTCACAAGGTTATATTAGCCTCTTTGGAGGAAGGAGTTCGGGAGGGTAGGATTTTGCTTCAAGAATGGCTAGTGATCCTCACAGCTCAGTACAATGATGCTTATAAACTTATTCAGAGTAATGGAAGTTCTATAAGATCTCAGATTGATGTTGCATTCTCTCAATGTCCTCAACTGCAGCCCCTACCGCGCCTAATTTTTGCTCTCCTTCGAAATCCTCTTCTCCGCTTTCACGAAGAAGGCGTCCACCCTGACTATCGCATCTATCTTCAATGTCTTTTCAGTGTGCTGGATCCAAGTTCTCTTCATCGTGCACTATATCCAGTGTTGACATCATATGCTACTCCAGATAAACAAGCATATCCTCGCCACTCACTGAGTCGTGCTGCACTGATTACCAGTGGCAGTCCAATATTTTTCCTTGATGCATTCACAATTCTGATTGTGTTTTATTCTTCGACTGCAGACCCAACACTTCCTTTTCCTCCGCCTCATGATTGTTTGTTAAGGACTACAATCAACAAGTTGAAGCAAGAGAGATGCATCACTCCCAAACTCATTTTTATTCGAGGAGGGCATGATGATGCCTCAATCTTTGAGAACTTTCTGATTGAGGAGCAGGATGTTGATGGAAGTAGCCTTACAAGTGTGATGGGTTTTGTTTCCTTTCTTGAAGATATTACTCAGAAAGTTTTAGAGTTCATGAGGTAG 2238 0.4508 MAVRATVSRFPIDTDAREGSGLLWGVTVTPFAAVDENGHSPAYGSGGDILPRCENCYGYFNTFCELEQWSWSCSLCGSVNGLSSDAIERYSRPQSCAEMMSSLVDLELPQEESADGGGAMQACPVYVAAVDLSSSEEFLELTKSALLAALEALAPGSLFGLATFSHKLGLYDVQGPIPVVKNVFIPPDAEGTLPIELEDVMPLLQFLAPVETCKDRIASALETLRPTSSWERTTAAGQGLDGVLLGGRGFGVAMEALCNYLGSEYGNTFALARVFAFLSGPPDYGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGSLFLYTSTEDSTLPQDMYRMLSRPYAFGCVLRMRTSTEFKPGNSYGHFFPDPQYENVQHIICCDSYATYAYDFVFENNVGFSRTLSDVPTIQIAFQYAVVSSPQELSDSEGVSTSRTTHSLKRRLRIRTLQFGVAKNIHELYDSCDPEVMLSLLVHKVILASLEEGVREGRILLQEWLVILTAQYNDAYKLIQSNGSSIRSQIDVAFSQCPQLQPLPRLIFALLRNPLLRFHEEGVHPDYRIYLQCLFSVLDPSSLHRALYPVLTSYATPDKQAYPRHSLSRAALITSGSPIFFLDAFTILIVFYSSTADPTLPFPPPHDCLLRTTINKLKQERCITPKLIFIRGGHDDASIFENFLIEEQDVDGSSLTSVMGFVSFLEDITQKVLEFMR 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0334 745 Coils Coil 744 745 - -
Lal9g0334 745 PANTHER SEC24-RELATED PROTEIN 1 743 - -
Lal9g0334 745 SUPERFAMILY Zn-finger domain of Sec23/24 45 111 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lal9g0334 745 SUPERFAMILY vWA-like 124 378 IPR036465 -
Lal9g0334 745 Pfam Sec23/Sec24 trunk domain 123 375 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lal9g0334 745 Pfam Sec23/Sec24 helical domain 501 612 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lal9g0334 745 SUPERFAMILY Helical domain of Sec23/24 501 616 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lal9g0334 745 Gene3D - 32 101 - -
Lal9g0334 745 PANTHER OS05G0443300 PROTEIN 1 743 - -
Lal9g0334 745 Gene3D Sec23/Sec24 helical domain 472 629 - -
Lal9g0334 745 SUPERFAMILY beta-sandwich domain of Sec23/24 3 500 - -
Lal9g0334 745 Gene3D von Willebrand factor, type A domain 123 380 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0334 Lal-Chr9 2222153 2228988 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0334 - - gmx:100807557 1394.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0334 9 2222153 2228988 Lal9g0334 9 2222153 2228988 ECH
Lal2g0352 2 2115170 2123212 Lal9g0334 9 2222153 2228988 LSH