Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0304 ATGCAGCAACCGAATCTGTTTCCCTTTCTAAGCCTTATTGGGAATCCTTTCGTTTTCAATGGTGACGATTTGAGTGACGGGATCGAAGGTTCTAGGGTTTTCTTTTTGCTTCCTTTCCTCTTTCTCTCTCAAGGTGGAACTATGGATTTGTCAAAGGTTGGTGAAAAGATCTTTAGTTCTGTTAGGTCTGCCAGATCCATGGGATTGCTCCCTGCATTTTCTGATCGCCCTGAGGATAATGAGTTGCTTCTAATGATGCATGATGCATTTCACTTTCTAATGCATTCGATGCGTATATCAAATTTGGTTCCAGCTCGAGCTGCTGCTGCAGCTGCTGTAGCTCGAGCTCTTGCAGGATTGCCTCCTCATCAGAGGTATAGTCTTTCATCAAGTTCAGAGGAGCTGAGTTCAATATATGGAAGCAGACCTCATGGCGAAGCAGTGGAGGAACTAGAGGATGGATTCTACGAGGAGGGGTTTGATCCAATTAGGCATGTTTTAGAGCTCGTTCCAGCTGATGAAAGCGAGCTAACCTATTTTGAAAAACAGGCTGCCCTTAGATTGACACAGCTGGATAGAGTAGCAGAGCGTTTATCTCGCAATGTGATGGAGCATCATGAAGTAATGGAATATATAGCTGATACTTACTTTTGGCCAGTGAAGGGGATGAATTTGGTTAGAGAATTAGAAAAGGACTTGAGAATTGCAAATGTCATCTGCATGAATGGAAGAAGACACTTGACATCATCTATGAATGAGGTCTCAAGGGATCTCATTGTAAATTCTTGTTCAAAAAAGAAACAAGCTCTTATGGATGTGCTTCTAATCTTGACTGAACTACGACGTGCTTTGGACATGCAATCAACACTTGAATCCCTTGTTGAGGAAGGGAATTACTGCAAGGCATTTCAAGTCCTATCTGAGTATTTGCAAATCTTGGATAGTTTGTCAAAGCTTTCAGCAATACAAGATATGAGTTGTGGTGTAGAGGTTTGGCTGGGAAGAACTTTACAGAAGCTGGATGCTGTTTTATTGGGAGTATGTCAAGAATTCAAAGAAGATGGCTATATAACCGTAATTGATGCCTATGCATTAATAGGGGATACCACTGGTCTTGCTGAAAAGATACAGAGTTTCTTCATGCAAGAAGTTATATCAGAAACACAATCTGTGTTAAAGGCTGTTGTGCATGAGGATGAGGAGGGGCTTTCACAGAATAGTAGGTTCACTTACAGCGACCTATGCCTTCAAATACCCGATTCTAAGTTTAGGCAATGCTTATTAAGAACATTGGCTGTTCTATTTGACCTTATGTATTCATACCATGGAATTATGGATTTTCAGCCAGAGAGAAAGGACTCAGCAGCGCAAACTCCAAATCAGTGCAATGAAGTCATTTTCTGTAGTCCAGGTCAGGAAGTTGATTCAGATGTAAGAGCCTGTAACAATTCTATGACTACTTCTGGAGATGTAATACATGAATCATCTTCTAGGGAGGAATCTACAAAAGTCAGCTCACTAACTGAAACTACCGGGATTACGGGATCACCACACAGTGGTTCTCATAATCCAGTCAATGAGGCTAGAAAGGAGGACAGTGCCACGTCAACCATTGATTCCCCATGGTACCATCTTCGCAAAGAAGCTACAACATTTGTTTCTCAAACACTTCAAAGAGGACGCAGGAACCTGTGGCATCTCAGTGCAAGTCGTGTGTCAGTATTGCTTTCTTCTGCTGCAGCTTGTTCTGCAAGCATTCATCAATTCTTGAAAAACTATGAAGATCTCAATGTCTTTATTTTGGCTGGGGAAGCCTTTTGTGGATTTGAAGCAGCTGAATTCAGGCAGAAGTTGAAGGTTGTTTGTGAAAACTATTTCATAGCTTTTCATCGACAAAATATGAATGCACTAAAAATGGTATTGGAGAAAGAGACTTGGTTAAGATTACCTCCAGATACAGTGCAAAGTATCAGTTTCGCTGGACTTGTTGGTGATGGAGCACCATTGATTTCTTTATCTAGTGGTAAATCAGTTAATGTTAGTGCGATCCATTCCAATAAATCAATGAGTATGGTTCACACCGGTCCTAGGAGGAGTGGGTTCTCAAATTGGATTAAAAGTGGAAACCCTTTTCTTCAAAAAATAACAATCTCCAAAGAGGGTTATGGTTACTCCCAACCTAATGGATCAATTTATGGTGAATTTGATGGAGGTTCAAGCAACAACTTTCAAGGTGATAAAGTATCACCTAGAAAGAATGATTCCAATAACATGAATGGTGCCAATTCAGTTTCAGAAGATGAAAATGAGGATCTTCTTGCAGACTTTATTGATGAAGATAGTCAACTGCCAAGTCGGATTTCCACAGCCAGTCATTCAAGAAGTAATTCTTTACATGGTAATGAGGAAGAGAATACAATACAAACTGGGTCTTCTCTATGTCTTTTAAGGTCTATGGATAAATATGCAAGGCTTATGCAGAAACTAGAAGTAGTAAACGTTGAGTTCTTTAAGGGAATATGCCAGTTGTTTAAAATTTTTTTCTACCTTGTATATGACACATTTGGTAAACAAAACACTAGTTCAAGTGGAAAAAGCTTAACTAACTCCCTGAATTACCGGTTGAGGACAGCCTTATCTAGAATAAACGAAGATTGTGATGAGTGGATTAAGCCACAATCGTCTTCACCAATGTCTTTTGGTTCATCATTTGTACATGCAGAGTTAACACCTGCAAGCCCTCCCAACACAAATTTTGCTCAGTCCTCTGGGTCTTCTTTTGGTCTCAAGGAAAGATGTGTGGCTGTTGATACTATGTCTCTTGTTGCTCGAATACTGAACAGATCTAAACCTCATCTCCAATCAATGCTTTTGCTAAGTAATTTAAATGTGCTTGAAGATTTCTATTCTCATCTGGTGGATGCTGTACCAGATCTTATAGAGCATGTTAATCGGACAACTGTGAGACTACTGCTGCACATTAATGGGTATGTTGAACGTATTGCGAATACTAAATGGGAAGTAAAAGAGCTTGGAATGGAGCATAATGGTTATGTTGATTTGTTACTGGGAGAATTTAAGCACTATAAAACACGCCTTGCTCACGGAGGAATTTGTAAAGAGACTCAAGACCTTTTATCGGACTATGGGCTTGAAATTGTGGCAGAAGCTCTTGTTGAAGGACTTTCACGAGTGAAGAGATGTAGTGATGAGGGACGAGCTCTAATGTCATTGGATCTGCAGGTTTTGATCAACGGCCTACAGCATTTTGTGTCATTGACTGTGAAGCCCAAGCTACAAACGGTTGAAACTTTTATTAAGGCTTACTACCTTCCTGAGACAGAATATGTGCATTGGGCACGTGCGCACCCGGAATACACTAAAAGCCAAATTGTTGGACTGGTCAACCTTGTAGCCACTATGAAGGGTTGGAAGAGGAAAACCAGGTTGGAAGTACTGGAGAAGATTGAATGA 3474 0.4044 MQQPNLFPFLSLIGNPFVFNGDDLSDGIEGSRVFFLLPFLFLSQGGTMDLSKVGEKIFSSVRSARSMGLLPAFSDRPEDNELLLMMHDAFHFLMHSMRISNLVPARAAAAAAVARALAGLPPHQRYSLSSSSEELSSIYGSRPHGEAVEELEDGFYEEGFDPIRHVLELVPADESELTYFEKQAALRLTQLDRVAERLSRNVMEHHEVMEYIADTYFWPVKGMNLVRELEKDLRIANVICMNGRRHLTSSMNEVSRDLIVNSCSKKKQALMDVLLILTELRRALDMQSTLESLVEEGNYCKAFQVLSEYLQILDSLSKLSAIQDMSCGVEVWLGRTLQKLDAVLLGVCQEFKEDGYITVIDAYALIGDTTGLAEKIQSFFMQEVISETQSVLKAVVHEDEEGLSQNSRFTYSDLCLQIPDSKFRQCLLRTLAVLFDLMYSYHGIMDFQPERKDSAAQTPNQCNEVIFCSPGQEVDSDVRACNNSMTTSGDVIHESSSREESTKVSSLTETTGITGSPHSGSHNPVNEARKEDSATSTIDSPWYHLRKEATTFVSQTLQRGRRNLWHLSASRVSVLLSSAAACSASIHQFLKNYEDLNVFILAGEAFCGFEAAEFRQKLKVVCENYFIAFHRQNMNALKMVLEKETWLRLPPDTVQSISFAGLVGDGAPLISLSSGKSVNVSAIHSNKSMSMVHTGPRRSGFSNWIKSGNPFLQKITISKEGYGYSQPNGSIYGEFDGGSSNNFQGDKVSPRKNDSNNMNGANSVSEDENEDLLADFIDEDSQLPSRISTASHSRSNSLHGNEEENTIQTGSSLCLLRSMDKYARLMQKLEVVNVEFFKGICQLFKIFFYLVYDTFGKQNTSSSGKSLTNSLNYRLRTALSRINEDCDEWIKPQSSSPMSFGSSFVHAELTPASPPNTNFAQSSGSSFGLKERCVAVDTMSLVARILNRSKPHLQSMLLLSNLNVLEDFYSHLVDAVPDLIEHVNRTTVRLLLHINGYVERIANTKWEVKELGMEHNGYVDLLLGEFKHYKTRLAHGGICKETQDLLSDYGLEIVAEALVEGLSRVKRCSDEGRALMSLDLQVLINGLQHFVSLTVKPKLQTVETFIKAYYLPETEYVHWARAHPEYTKSQIVGLVNLVATMKGWKRKTRLEVLEKIE 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0304 1157 Pfam Protein of unknown function C-terminus (DUF2451) 927 1157 IPR019514 -
Lal9g0304 1157 MobiDBLite consensus disorder prediction 501 523 - -
Lal9g0304 1157 MobiDBLite consensus disorder prediction 735 766 - -
Lal9g0304 1157 PANTHER UNCHARACTERIZED 103 1157 IPR040047 GO:0032456|GO:0042147|GO:1990745
Lal9g0304 1157 PANTHER UNCHARACTERIZED 1 78 IPR040047 GO:0032456|GO:0042147|GO:1990745
Lal9g0304 1157 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATED 103 1157 - -
Lal9g0304 1157 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATED 1 78 - -
Lal9g0304 1157 MobiDBLite consensus disorder prediction 735 767 - -
Lal9g0304 1157 MobiDBLite consensus disorder prediction 487 534 - -
Lal9g0304 1157 Pfam Vacuolar-sorting protein 54, of GARP complex 148 447 IPR019515 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0304 Lal-Chr9 1944561 1960087 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0304 K23288 - gmx:100788476 1803.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0304 9 1944561 1960087 Lal9g0304 9 1944561 1960087 ECH
Lal1g0409 1 2512536 2530161 Lal9g0304 9 1944561 1960087 LSH