Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0409 ATGCAGCAACCGAATCTGTTACCTATTGGAAGCTTTTTTTTAGGGAATCCTTTCATTTTCAATGGCGACGATTTGAGTGACGGAATCGAAGGTTCTAGGGTTTTCTTATTGCTTCCTTTCTTCTTGCTCTCTCAAGGTGGAGTTATGGATTTTTCTAAGGTCGGTGAAAAGATCTTGAGTTCAGTTAGGTCCGCTAGATCCATGGGATTGCTCCCTCCACTTTCTGATCGTCCTGAGGTTCCAGCTCGAGCTGCTGCTGCAGCTGCTGTAGCTCGTGCTCTTGCAGGATTGCCTCCTCACCAGAGGTATAGTCTTTCATCAAGTTCAGAAGAACTGAGTTCAATATATGGAAGCAGACCTCATGGTGAAGTAGTGGAAGAACTAGAGGATGGATTCTACGAGGAGGAGTTTGATCCAATTAGGCATGTTTTAGAGCTTGTTCCATCTGATGAAAACGAGCTAACCTATTTTGAAAAACAGGCTGCCCTTAGATTGACACAACTGGATAGAGTCGCAGAACGTTTATCTCGCCATGTTATGGAGCATCATGAAGTAATGGTGAAGGGGATGAATTTGGTCAGAGAATTAGAAAAGGACTTGAGAATTGCAAATGTCATATGCATGAATGGAAGAAGACACTTGACATCATCTATGAATGAGGTTTCAAGGGATCTCGTTGTGAATTCTTATTCAAAAAAGAAACAAGCTCTTATGGATGTGCTCCCAGTCTTGACTGAACTACGACGTGCTTTGGACATGCAATCAACACTTGAATCCCTCATAGAGGAGGGGAATTACTGCAAGGCATTTCAAGTCCTATCTGAGTATTTGCAAATCTTAGATAGTTTGTCACAGCTTTCAGCAATACAAGATATGAGTCGTGGCGTGGAGGTTTGGCTGGGAATAACTTTACAGAAGCTGGATGCTCTTTTATTGGGAGTATGTCAGGAATTCAAAGAAGATGGCTACATAACAGTAATCGATGCCTATGCATTAATAGGGGATACCACTGGTCTTGCTGACAAGATACAAAGTTTCTTCATGCAAGAAGTTATATCAGAAACACACTCTGTTTTAAAGGCTGTTGTGCATGAGGATGGGGAGGGGCTTTCACAAAACAGTAGGCTCACTTACAGCGACCTATGCCATAACATACCCGACTCTAAGTTTAGGCAGTGCTTACTAAGAACATTGGCTGTTATATTTGACCTTATGTGCTCATACCATGGAATTATGGATTTTCAGCTAGAGAGGAAGGACTCAGAAGCACAAACTTCGAATAAGTGCAATGAAGTCATTTCCTGTAGTACAGGCCAGGAAGTTGATTCAGATGTAAAAGCCTGCAACAATTCTATGACCACGTCTGGAGATGTAATACATGACTTATCTTCTAGGGAGGAGTCTACAACAGTCAGCTCACTGACTGAAACTACTGTTTCATCAAACAGTGATTCTCATAATCCAGTCAATGAGACTAGAAAGGAGGACAGTCCAGCATCAATCATTGAATCCCCGTGGTACCATCTTCGCAAAGAAGCTACAACATTTGTTTCCCAAACCCTTCAAAGAGGACGCAGGAATCTGTGGCATCTCAGTGCAAGTCGTGTGTCAGTATTGCTTTCTTCTGCTGCAGCTTGTTCTGCAAGCATTCATCAATTCTTGAAAAGTTATGAAGACCTCAATGCTTTCATTTTGGCTGGGGAAGCCTTTTGTGGATTTGAAGCAGTTGAATTGAGGCAGAAGTTGAAGGTTGTTTGTGAAAACTATTTCATAGCTTTCCATCGCCAAAATGTGCATGCACTAAAAATGGTATTGGAGAAAGAGACTTGGTTAACATTGCCTCCAGATACAGTGCAAATTGTCAGTTTTGTTGGACTTACTGGTCATGGAGCTCCCTTGGTTTCTTTATCTAGTGGTAAACCAGTTAATATTAGTGCAATCCATTCCAATAAATCAATGGATATTGTCCACACCAGTCCTAGGAGGAGTGGTTTCTCTCATTGGATTAAAAGTGGAAACCTTTTTCTGCAAAAAATAACAATTTCGAAAGAAGGTCATGGTTACTCCCAACCTAATGGATCTATTTATGGTGAATTTGATGGAGGTTCAAGCAACAACTGTATTGGTGATAAAGTATCACCTAGAAAGAATGATTCCGATCACATGAGTGGTGCCAATTCTGTCTCAGAAGATGAAAATGAGGATCTTCTTGCAGATTTTATTGATGAAGATAGTCAACTGCCAAGTCGAATATCTAAACCCAGTCATTCAAGAAGTAACTCTTCACGTGGTAACGACGAAGAAAGTACAATACAAACTGGGTCTTCACTATGCCTTTTAAGGTCTATGGATAAATATGCAAGGCTTATGCAGAAACTAGAAGTAGTGAATGTTGAGTTCTTTAAGGGAATATGCCAGTTGTTTGAAATTTTTTTCCACCTCATATATGAGACGTTTTGTCAACAAAAGACTAGTCCGAGTGCAAAAAACTCAACCAACTCTCTTAATTATCGGTTGAGGACGGCCTTATCTAGAATAAACCAAGATTGTGATGAATGGATTAAGCCACAATCGTCTTCACCAATGTCTTTTGGTTCATCATTTGTAAATGCTGATTTAACACCTGCAAGCCCTCCCAGCACAAATTTTGCTCACTCATCTGGGTCTTCTTTTGGTCTCAAGGAAAGATGTGTGGCTGTTGACACTATGTCTCTTGTTGCTCGAATACTGAATAGATCCAAAGCTCATATCCAATCAATGCTTTTGCTAAGTAATTCAACTGTACTTGAAGATTTCTATTCTCATATGGTGGATGCTGTACCAGATCTCATCGAGCATGTTAATCGGACAACTGCGAGACTACTTTTGCACATTAATGGGTATGTTGAACGTATTGCCAATACTAAATGGGAAGTAAAAGAGCTTGGGATGGAGCATAATGGTTATGTTGATTTGTTGCTGGGAGAATTTAAGCACTATAAAACACACCTTGCTCACGGAGGAATTCGCAAAGAGGCTCAAGATCTATTATCAGCCTATGGGCTTGAAATTGTGGCAGAAACTCTTGTGGAAGGACTTTCTAGAGTGAAGAGATGTAGTGATGAAGGACGAGCTCTAATGTCATTGGATATGCAGGTTTTGATCAACGGGCTACAACATTTTGTGTCATTGAATGTGAAGCCCAAGCTACAAATAGTTGAAACTTTTATCAAGGCTTACTACCTTCCCGAGACAGAATATGTGCATTGGGCACGTGCACACAAGGAATACAGTAAAAGCCAGATTGTTGGACTGGTTAACCTTGTAGCCACCATGAAAGGCTGGAAGAGGAAAACCAGGTTGGAAGTACTGGAAAAGATTGAATGA 3366 0.4076 MQQPNLLPIGSFFLGNPFIFNGDDLSDGIEGSRVFLLLPFFLLSQGGVMDFSKVGEKILSSVRSARSMGLLPPLSDRPEVPARAAAAAAVARALAGLPPHQRYSLSSSSEELSSIYGSRPHGEVVEELEDGFYEEEFDPIRHVLELVPSDENELTYFEKQAALRLTQLDRVAERLSRHVMEHHEVMVKGMNLVRELEKDLRIANVICMNGRRHLTSSMNEVSRDLVVNSYSKKKQALMDVLPVLTELRRALDMQSTLESLIEEGNYCKAFQVLSEYLQILDSLSQLSAIQDMSRGVEVWLGITLQKLDALLLGVCQEFKEDGYITVIDAYALIGDTTGLADKIQSFFMQEVISETHSVLKAVVHEDGEGLSQNSRLTYSDLCHNIPDSKFRQCLLRTLAVIFDLMCSYHGIMDFQLERKDSEAQTSNKCNEVISCSTGQEVDSDVKACNNSMTTSGDVIHDLSSREESTTVSSLTETTVSSNSDSHNPVNETRKEDSPASIIESPWYHLRKEATTFVSQTLQRGRRNLWHLSASRVSVLLSSAAACSASIHQFLKSYEDLNAFILAGEAFCGFEAVELRQKLKVVCENYFIAFHRQNVHALKMVLEKETWLTLPPDTVQIVSFVGLTGHGAPLVSLSSGKPVNISAIHSNKSMDIVHTSPRRSGFSHWIKSGNLFLQKITISKEGHGYSQPNGSIYGEFDGGSSNNCIGDKVSPRKNDSDHMSGANSVSEDENEDLLADFIDEDSQLPSRISKPSHSRSNSSRGNDEESTIQTGSSLCLLRSMDKYARLMQKLEVVNVEFFKGICQLFEIFFHLIYETFCQQKTSPSAKNSTNSLNYRLRTALSRINQDCDEWIKPQSSSPMSFGSSFVNADLTPASPPSTNFAHSSGSSFGLKERCVAVDTMSLVARILNRSKAHIQSMLLLSNSTVLEDFYSHMVDAVPDLIEHVNRTTARLLLHINGYVERIANTKWEVKELGMEHNGYVDLLLGEFKHYKTHLAHGGIRKEAQDLLSAYGLEIVAETLVEGLSRVKRCSDEGRALMSLDMQVLINGLQHFVSLNVKPKLQIVETFIKAYYLPETEYVHWARAHKEYSKSQIVGLVNLVATMKGWKRKTRLEVLEKIE 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0409 1121 MobiDBLite consensus disorder prediction 747 770 - -
Lal1g0409 1121 MobiDBLite consensus disorder prediction 463 498 - -
Lal1g0409 1121 MobiDBLite consensus disorder prediction 748 770 - -
Lal1g0409 1121 Pfam Vacuolar-sorting protein 54, of GARP complex 125 414 IPR019515 -
Lal1g0409 1121 PANTHER UNCHARACTERIZED 1 1121 IPR040047 GO:0032456|GO:0042147|GO:1990745
Lal1g0409 1121 MobiDBLite consensus disorder prediction 463 487 - -
Lal1g0409 1121 MobiDBLite consensus disorder prediction 707 731 - -
Lal1g0409 1121 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATED 1 1121 - -
Lal1g0409 1121 Pfam Protein of unknown function C-terminus (DUF2451) 891 1121 IPR019514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0409 Lal-Chr1 2512536 2530161 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0409 K23288 - gmx:100788476 1783.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0409 1 2512536 2530161 Lal1g0409 1 2512536 2530161 ECH
Lal1g0409 1 2512536 2530161 Lal9g0304 9 1944561 1960087 LSH