Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0285 ATGGCTTCAACCAACGCTCTCTCCTCTGCTTCCATTCTTCGCTCTCCCAAACAACAGAGCTTAAGCAGAAGAGTGAACCAAAATGGAAATGGAAGGGTTAATTATAGACAACAAAATAATCGATTCTGTGTGAAAGCTTCTGCTAAAGATATTGCTTTTGACCAGCGTTCTCGTGCAGCTCTTCAAGCTGGTATTGATAAGCTTACTGATGCTGTTGCCCTCACTCTTGGCCCAAGGGGGAGGAATGTTGTGTTGGATGAGTTTGGAAATCCTAGAGTTGTTAATGATGGAGTTACCATTGCCCGTGCTATTGAGCTACCTGATCCCATGGAAAATGCTGGTGCTGCTCTCATTAGGGAGGTTGCTAGCAAAACTAATGACTCTGCGGGGGATGGAACAACAACTGCTTCGGTTCTTGCTCGAGAAATAATTAGACTTGGACTTCTCAATGTGACCGCTGGTGCTAATCCTGTCTCCATTAAGAGAGGAATTGATAAAACTGTACAGGGTCTGGTGGCGGAGCTTGAGAAGAAAGCTAGGCCTGTCAAAGGAGGAGATGATATCAAAGCCGTGGCTTCTATTTCTGCTGGAAATGATGAGTTGATTGGGAAAATGATTGCTGATGCAATTGACAAGGTAGGACCAGATGGAGTGTTATCCATTGAGTCATCCTCCTCTTTTGAGACTACAGTTGAAGTAGAAGAAGGAATGGAGATTGACAGAGGCTATATCTCCCCGCAATTTGTTACAAACCCCGAGAAGTCAATTGTTGAATTTGAGAATGCAAGAGTCTTGATAACAGATCAGAAGATTTCTGCAATAAAAGATATAATTCCTCTGTTGGAGAAAACCACTCAATTGAGAGCCCCCTTGCTGATCATTGCTGAAGATATCACTGGTGAGGCTTTGGCTACCCTTGTTGTGAATAAGCTGCGGGGTATTCTTAATGTTGCTGCCATCAAAGCTCCTGGCTTTGGTGAGCGCCGAAAGGCCCTCCTTCAAGACATTGCTATATTGACAGGTGCTGAGTTCCAAGCCAGTGATCTGGGCCTACTTGTGGAAAACACTTCAGTTGAACAGCTTGGTTTGGCTCGGAAGTTGACTATCTCCAAGGATTCAACCACTATCATTGCTGATGCTGCATCAAAGGATGAGTTGCAAGCCCGGGTTGCACAGTTAAAGAAGGAGTTGTCAGAGACTGACTCAGTGTATGATTCAGAGAAGCTGGCTGAGAGGATTGCTAAGTTATCTGGTGGAGTTGCAGTCATCAAGGTTGGTGCTGCTACAGAGACCGAACTTGAGGATCGTAAGCTCCGTATCGAGGATGCCAAGAATGCAACATTTGCTGCCATCGAGGAAGGCATTGTACCTGGTGGAGGTACTGCATTGGTTCATCTGTCTGCCTATGTCCCAGCTATCAAGGAAACGATTGAAGATGCAGAAGAGAGGCTAGGAGCTGACATTGTGCAGAAGGCATTGGTAGCACCTGCATCATTGATTGCTCAGAATGCTGGAATTGAAGGTGAAGTTGTTGTAGAGAAAATAAGGAATGGTGAATGGGAGTTTGGTTACAATGCCATGACAGACAAGTATGAGAATTTAGTGGAGGCTGGAGTAATTGACCCTGCCAAGGTAACAAGGTGTGCTTTGCAGAATGCTGCTTCAGTTGCTGGAATGGTCTTGACCACTCAGGCCATTGTTGTGGAAAAGCCTAAGCCCAAGGCACCTGTGGCTGGTGAGCCACAAGGCCTTACTGTTTGA 1761 0.456 MASTNALSSASILRSPKQQSLSRRVNQNGNGRVNYRQQNNRFCVKASAKDIAFDQRSRAALQAGIDKLTDAVALTLGPRGRNVVLDEFGNPRVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIRLGLLNVTAGANPVSIKRGIDKTVQGLVAELEKKARPVKGGDDIKAVASISAGNDELIGKMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKLTISKDSTTIIADAASKDELQARVAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAYVPAIKETIEDAEERLGADIVQKALVAPASLIAQNAGIEGEVVVEKIRNGEWEFGYNAMTDKYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPVAGEPQGLTV 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0285 586 Coils Coil 383 403 - -
Lal9g0285 586 PANTHER BNAA04G16190D PROTEIN 1 584 - -
Lal9g0285 586 Hamap Chaperonin GroEL [groEL]. 47 584 IPR001844 GO:0042026|GO:0140662
Lal9g0285 586 Pfam TCP-1/cpn60 chaperonin family 68 571 IPR002423 GO:0005524
Lal9g0285 586 CDD GroEL 49 569 IPR001844 GO:0042026|GO:0140662
Lal9g0285 586 Gene3D - 51 568 IPR027413 -
Lal9g0285 586 SUPERFAMILY GroEL-intermediate domain like 407 452 IPR027410 -
Lal9g0285 586 Gene3D GroEL 236 417 IPR027409 -
Lal9g0285 586 Gene3D - 181 454 IPR027410 -
Lal9g0285 586 TIGRFAM GroEL: chaperonin GroL 48 572 IPR001844 GO:0042026|GO:0140662
Lal9g0285 586 MobiDBLite consensus disorder prediction 1 36 - -
Lal9g0285 586 SUPERFAMILY GroEL equatorial domain-like 58 567 IPR027413 -
Lal9g0285 586 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 584 - -
Lal9g0285 586 ProSitePatterns Chaperonins cpn60 signature. 449 460 IPR018370 GO:0005524|GO:0006457
Lal9g0285 586 PRINTS 60kDa chaperonin signature 72 98 IPR001844 GO:0042026|GO:0140662
Lal9g0285 586 PRINTS 60kDa chaperonin signature 127 154 IPR001844 GO:0042026|GO:0140662
Lal9g0285 586 PRINTS 60kDa chaperonin signature 312 335 IPR001844 GO:0042026|GO:0140662
Lal9g0285 586 PRINTS 60kDa chaperonin signature 394 419 IPR001844 GO:0042026|GO:0140662
Lal9g0285 586 PRINTS 60kDa chaperonin signature 442 463 IPR001844 GO:0042026|GO:0140662
Lal9g0285 586 SUPERFAMILY GroEL-intermediate domain like 181 246 IPR027410 -
Lal9g0285 586 SUPERFAMILY GroEL apical domain-like 228 420 IPR027409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0285 Lal-Chr9 1794257 1797632 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0285 - - gmx:100775463 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0285 9 1794257 1797632 Lal9g0285 9 1794257 1797632 ECH
Lal1g0392 1 2399636 2402968 Lal9g0285 9 1794257 1797632 LSH