Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0392 ATGATGGCTTCAACCAACACTCTCTCCTCCGCTTACCTTATCCGCTCCCCCAAACAACAGTGTTTGATCAATAGATTGAACCAAAGTAGGAGTGGTAGAGTCAATTACAGACAAAACAACACTCGTTTCTCCGTTAAAGCATCTGCTAAAGATATCGCATTTGACCAGAGTTCCCGTGCCGCTCTTCAATCCGGCATCGACAAACTCACCGATGCCGTTGGACTCACTCTCGGCCCAAGGGGGAGGAATGTTGTGTTAGATGAATTTGGAAATCCTAAAGTTGTTAATGATGGAGTTACTATTGCTCGCGCTATTGAGTTACCCGATCCAATGGAAAATGCTGGTGCCTCTCTTATTAGAGAGGTTGCTAGTAAAACTAATGACTCTGCTGGTGATGGAACAACAACGGCTTCGGTTCTTGCTCGAGAAATAATTAAGCTTGGACTTCTCAATGTGACATCTGGTGCTAATCCTGTCTCCATTAAGAGAGGAATTGAAAAAACAGTACAGGGTTTGGTGGCTGAGCTTGAGAAGAAAGCCAGACCTGTCAAAGGAGGAGATGATATCAAAGCTGTGGCTTCCATTTCTGCTGGAAATGATGATTTGATTGGGCAAATGATTGCCGAAGCAGTTGAGAAGGTTGGACCCGATGGTGTTCTGTCCATTGAATCATCTTCCTCTTTTGAGACTACAGTTGAAGTTGAAGAAGGAATGGAGATTGACAGAGGCTATATCTCCCCTCAATTTGTTACAAACCCTGAGAAGTCAATTGTTGAATTTGAGAATGCAAGAGTCTTGGTAACAGATCAGAAGATTTCAGCGATAAAAGATATAATTCCCCTGTTGGAGAAAACCACTCAATTAAGAGCACCCTTGCTTATCATTGCTGAAGATATCACTGGTGAGGCTTTGGCTACCCTTGTTGTGAATAAGCTGCGGGGTATCATTAATGTTGCTGCCATCAAAGCTCCTGGTTTTGGTGAGCGCCGGAAGGCTCTCCTTCAAGACATTGCTATATTGACAGGTGCCGAGTTCCAAGCCAGTGATCTTGGCCTACTAGTTGAAAACACTTCAATTGAGCAGCTTGGTTTGGCTCGGAAGTTGACCATCTCCAAGGATTCAACCACTATTATTGCCGATGCTGCCTCAAAGGATGAGTTGCAATCTAGGGTTGCACAGTTAAAAAGAGAGTTGTTTGAGACAGACTCGGTTTATGATTCAGAGAAACTGGCTGAGAGGATTGCTAAATTGTCTGGTGGGGTTGCAGTCATCAAGGTTGGTGCTGCTACAGAGAGCGAACTTGAGGACCGTAAGCTCCGTATTGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTTCCTGGTGGAGGTACTGCACTGGTTCACCTTTCTGCTTATGTCCCAGCAATCAAGGAAACGATTGAAGATGCAGATGAGAGGCTAGGAGCCGATATTGTGCAAAAGGCATTGGTAGCACCTGCATCATTGATAGCTCAAAATGCTGGAATTGAAGGTGAAGTTGTTGTAGAGAAAATAAGGAACAGTGAATGGGAGGTTGGTTACAATGCCATGACAGACAAGTATGAGAATTTAGTTGAGGCTGGAGTGATTGACCCTGCCAAGGTAACAAGGTGTGCTTTGCAGAATGCTGCTTCAGTTGCTGGTATGGTTTTGACAACTCAGGCTATCGTGGTTGAAAAGCCTAAGCCAAGGGCACCTCTACCTGGTGCCCCACAAGGCCTTACTGTTTGA 1764 0.4484 MMASTNTLSSAYLIRSPKQQCLINRLNQSRSGRVNYRQNNTRFSVKASAKDIAFDQSSRAALQSGIDKLTDAVGLTLGPRGRNVVLDEFGNPKVVNDGVTIARAIELPDPMENAGASLIREVASKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSIKRGIEKTVQGLVAELEKKARPVKGGDDIKAVASISAGNDDLIGQMIAEAVEKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKSIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGIINVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSIEQLGLARKLTISKDSTTIIADAASKDELQSRVAQLKRELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATESELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAYVPAIKETIEDADERLGADIVQKALVAPASLIAQNAGIEGEVVVEKIRNSEWEVGYNAMTDKYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPRAPLPGAPQGLTV 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0392 587 PRINTS 60kDa chaperonin signature 73 99 IPR001844 GO:0042026|GO:0140662
Lal1g0392 587 PRINTS 60kDa chaperonin signature 128 155 IPR001844 GO:0042026|GO:0140662
Lal1g0392 587 PRINTS 60kDa chaperonin signature 313 336 IPR001844 GO:0042026|GO:0140662
Lal1g0392 587 PRINTS 60kDa chaperonin signature 395 420 IPR001844 GO:0042026|GO:0140662
Lal1g0392 587 PRINTS 60kDa chaperonin signature 443 464 IPR001844 GO:0042026|GO:0140662
Lal1g0392 587 SUPERFAMILY GroEL equatorial domain-like 53 568 IPR027413 -
Lal1g0392 587 TIGRFAM GroEL: chaperonin GroL 49 573 IPR001844 GO:0042026|GO:0140662
Lal1g0392 587 SUPERFAMILY GroEL apical domain-like 229 421 IPR027409 -
Lal1g0392 587 PANTHER BNAA04G16190D PROTEIN 2 585 - -
Lal1g0392 587 Pfam TCP-1/cpn60 chaperonin family 69 572 IPR002423 GO:0005524
Lal1g0392 587 Gene3D GroEL 237 418 IPR027409 -
Lal1g0392 587 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 2 585 - -
Lal1g0392 587 Gene3D - 182 455 IPR027410 -
Lal1g0392 587 ProSitePatterns Chaperonins cpn60 signature. 450 461 IPR018370 GO:0005524|GO:0006457
Lal1g0392 587 SUPERFAMILY GroEL-intermediate domain like 182 247 IPR027410 -
Lal1g0392 587 Coils Coil 384 404 - -
Lal1g0392 587 Hamap Chaperonin GroEL [groEL]. 48 585 IPR001844 GO:0042026|GO:0140662
Lal1g0392 587 CDD GroEL 50 570 IPR001844 GO:0042026|GO:0140662
Lal1g0392 587 Gene3D - 52 569 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0392 Lal-Chr1 2399636 2402968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0392 - - gmx:100806471 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0392 1 2399636 2402968 Lal1g0392 1 2399636 2402968 ECH
Lal1g0392 1 2399636 2402968 Lal9g0285 9 1794257 1797632 LSH