LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal9g0274	ATGTATAAGAACCAGCTTCAGGAGCTGGCACAGCGAAGCTGTTTCAACCTCCCATCCTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCGAGGTTCAAAGCCACCGTTAACTTCAACGGCGAGATCTTCGACAGCCCTCACTACTGCACCACGCTGCGCCAGGCCGAGCACTCCGCCGCTGAGGTTGCCCTCAACTCCCTCTCCCACCGTGGACCCTCTCACTCCCTTGCCGCCAGAATCCTCGATGAGACAGGAGTCTATAAGAATCTCTTACAGGAAATTGCACAAAGGGTGGGGGCTCCACTGCCACAGTACACAACATTCAGGTCGGGCCTAGGACACCTACCTGTTTTTACCGGGACAGTAGAATTGGCTGGAATCACATTTACCGGCGAACCTGCCAAGAATAAGAAACAGGCAGAGAAAAATGCTGCTATGGCAGCTTGGTCATATCTAAAACAATTTTTTCCCCGTCTCATGGTAAAAGGAACTGCAAGCTCTTCAACTGAACCAGAGAACAATGACGAGCTAGAACAGATCACAATAGCCAGGGCCTTACTAAACTACCGTTTGAAGGAAAAGATAGCTATGTCAAATCCAAATGATCCAATTCCATTTCCGAAGAGGTTTCAGTTTCCAAATTCCAGGCCTACCAGTCCCCAACCTCCACCTGCTGCTACATCAAAGATACTTCCATTAATTTGCCCAAAGACAGTACCTCGAAGCAGACATTCGTTCACAACATCAAATGAAAGTCCTCGAATCAGGCATCCAGTAGCAGCAGCAGCTGCCAGTGACAATCCTATAAAGTCACCTTTCTCTTGTGCACTAGAAAGCCGAGGGACCAATCGCCCAAAGTTCCCTGCAGTAGGAGCAGCACCTTACGTTCCCATCAGACAAATGCGTTCACCTTGCCAGGGTATTGCACCTCCAGTTACTATAAGGACTGCAATACCTGTATTCTCTGCACCACCACTACCACCTCCCGCCATGATGGCCCATCAAGTAATGCGAGCGCCTCCTGTACGAGTTGCTCCTTCAGTCAACATTCGCCAAGCTGTTCCAGTATATGCTGCTCCACCACCAGTTCGAAAAGATGAACCTGTTCCTATCCGAGAAGACGATCCACCAGCAGCTATTACTGTGCCTAGCCAGGAAGATAAACTGCCTGCCACCGTCGTGGAAGATAAACTGCCTGCCACCATCGTGGAAGATAAACTGCCTGCCACCATCGAGGAAGATAAACTGCCTGCCACCGTCGAGGAAGATAAACTGCCTGCCACCATTGTGCAAGGTAAACTGCTAGGTAAAAGTCAGGAGATGGACAGCAAAACTCAGAACATTCCACCAGAATCCGAGACAGCGCAGAGCTTGGAACAGCTGAAAATTTGA	1395	0.4996	MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFDSPHYCTTLRQAEHSAAEVALNSLSHRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSYLKQFFPRLMVKGTASSSTEPENNDELEQITIARALLNYRLKEKIAMSNPNDPIPFPKRFQFPNSRPTSPQPPPAATSKILPLICPKTVPRSRHSFTTSNESPRIRHPVAAAAASDNPIKSPFSCALESRGTNRPKFPAVGAAPYVPIRQMRSPCQGIAPPVTIRTAIPVFSAPPLPPPAMMAHQVMRAPPVRVAPSVNIRQAVPVYAAPPPVRKDEPVPIREDDPPAAITVPSQEDKLPATVVEDKLPATIVEDKLPATIEEDKLPATVEEDKLPATIVQGKLLGKSQEMDSKTQNIPPESETAQSLEQLKI	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal9g0274	464	SUPERFAMILY	dsRNA-binding domain-like	2	68	-	-
	Lal9g0274	464	SMART	DRBM_3	2	69	IPR014720	-
	Lal9g0274	464	SMART	DRBM_3	88	154	IPR014720	-
	Lal9g0274	464	MobiDBLite	consensus disorder prediction	201	229	-	-
	Lal9g0274	464	Pfam	Double-stranded RNA binding motif	88	153	IPR014720	-
	Lal9g0274	464	Pfam	Double-stranded RNA binding motif	2	68	IPR014720	-
	Lal9g0274	464	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	87	155	IPR014720	-
	Lal9g0274	464	Gene3D	-	84	154	-	-
	Lal9g0274	464	Gene3D	-	2	83	-	-
	Lal9g0274	464	PANTHER	DOUBLE-STRANDED RNA-BINDING PROTEIN 2	1	464	-	-
	Lal9g0274	464	MobiDBLite	consensus disorder prediction	439	464	-	-
	Lal9g0274	464	CDD	DSRM_AtDRB-like_rpt2	86	154	IPR044451	GO:0003725
	Lal9g0274	464	PANTHER	-	1	464	-	-
	Lal9g0274	464	CDD	DSRM_AtDRB-like_rpt1	1	69	IPR044450	GO:0003725
	Lal9g0274	464	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	1	70	IPR014720	-
	Lal9g0274	464	MobiDBLite	consensus disorder prediction	434	464	-	-
	Lal9g0274	464	SUPERFAMILY	dsRNA-binding domain-like	88	162	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal9g0274	Lal-Chr9	1691990	1696230	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal9g0274	-		-	lja:Lj3g3v1074930.1	568.926

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal9g0274	9	1691990	1696230	Lal9g0274	9	1691990	1696230	ECH
	Lal1g0381	1	2304328	2308094	Lal9g0274	9	1691990	1696230	LSH
	Lal2g0293	2	1708419	1712095	Lal9g0274	9	1691990	1696230	LSH