Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0293 ATGTATAAGAACCAGCTTCAGGAGCTGGCACAACGAAGCTGTTTCAACCTTCCATCCTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCAAGGTTCAAAGCCACCGTCAACTTCAACGGCGAGATCTTCGAGAGTCCACACTACTGCACCACTCTGCGCCAGGCGGAGCACTCCGCCGCAGAGGTTGCCCTAAACAACCTCTCCCACCGTGGACCCTCTCACTCCCTCGCCGCAAGAATACTCGATGAGACGGGAGTCTACAAGAATCTCTTACAAGAAATTGCACAAAGGGTAGGGGCACCATTGCCACAGTACACAACGTTCAGGTCAGGCCTAGGACACCTACCTGTTTTTACTGGGGCTGTAGAATTGGCTGGAATCACATTCACTGGTGAACCTGCGAAGAATAAGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCGTGGTCATCTCTAAAACAATTGGCAAAAGAAACTGCGAGCTCATCAACTGAACCAGAGAACAATGAGGAGCTAGAACAGATCACAATAGCGAGGGCCTTACTAAACTACCGTTTGAAGGAAAAGATGGCAATGTCAAATCCAAATGCTCCAATTCTATTTCCGAAGAGGTTTCAGATTCAAAATTCCAGGCCAACCAGTCCTCAACCTCGACCTGCTGCTACTTCGAAGATACTTCCCTTAATTTGCCCGAAGATGGTACCTCGAAGCAGGCATTCCTTGACAACATCAAATGGAAGTACTCATAGCAGGCATCCAGTAGCTGCAGCAGCTGCCAATGACAATCCTATGAAATCACCTTTCTCTTGTACACTAGAAAGCCGAGGGACCCATCGCCCAAAGTTCCCTGCAGTAGGAGCAGCACCTTATGTCCCCATTAGACAAATAAGACCATTTTGTCAGGGTATTGCGCCTCCGGTTACAATAAGGACCGCAGTGCCTGTATTCTCTGCACCACCGCTTCCACCACCAGCCATGATGTCTCGTCAAATAATGCGGGCACCTCCTGCACATGTTGCTCCCTCAGTCAATATTCGCCAAGCTGTTCCAGTATATGCTGCTCCACCATCATTTCAAAAAGTTGAACCTGTTCCCATCCAAAAAGACGATCCAACAGCTGCTACTGCTGTCCCTAGCCAGGAAGATAAACTGCCTGCGATAAGCCCAGAGGATAAACTACTTGCCACCAGCGAGGAAGTTAAACAACCTATTACCAGCCAGGAAGATACGCTGCAAGCTAAAAATCAGAAGACAGACACCAAAATTGAGAACGTTCCCCCAGAATCCGATACAGTGCAGAGCTTGGAGCAGCTGAAAATATGA 1326 0.4872 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCTTLRQAEHSAAEVALNNLSHRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGAVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNEELEQITIARALLNYRLKEKMAMSNPNAPILFPKRFQIQNSRPTSPQPRPAATSKILPLICPKMVPRSRHSLTTSNGSTHSRHPVAAAAANDNPMKSPFSCTLESRGTHRPKFPAVGAAPYVPIRQIRPFCQGIAPPVTIRTAVPVFSAPPLPPPAMMSRQIMRAPPAHVAPSVNIRQAVPVYAAPPSFQKVEPVPIQKDDPTAATAVPSQEDKLPAISPEDKLLATSEEVKQPITSQEDTLQAKNQKTDTKIENVPPESDTVQSLEQLKI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0293 441 Gene3D - 84 155 - -
Lal2g0293 441 Gene3D - 2 83 - -
Lal2g0293 441 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Lal2g0293 441 MobiDBLite consensus disorder prediction 370 441 - -
Lal2g0293 441 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 440 - -
Lal2g0293 441 PANTHER - 1 440 - -
Lal2g0293 441 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Lal2g0293 441 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Lal2g0293 441 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Lal2g0293 441 SMART DRBM_3 88 154 IPR014720 -
Lal2g0293 441 SMART DRBM_3 2 69 IPR014720 -
Lal2g0293 441 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Lal2g0293 441 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Lal2g0293 441 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Lal2g0293 441 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Lal2g0293 441 MobiDBLite consensus disorder prediction 400 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0293 Lal-Chr2 1708419 1712095 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0293 - - gmx:100815739 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0293 2 1708419 1712095 Lal2g0293 2 1708419 1712095 ECH
Lal1g0381 1 2304328 2308094 Lal2g0293 2 1708419 1712095 LSH
Lal2g0293 2 1708419 1712095 Lal9g0274 9 1691990 1696230 LSH