Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0220 ATGATTTTTTCAAGAATTGGGCGATCCCTCTCTCGTTCTTCTCGCGCTAGAAATTTGTTGCACGGCGATGGGAGATTCGGAACCCTAGTTGGAGCTTCACGTACGAACGGTGCATCCTTTTCCGACGAAGGAGGATTTTCAAGGGGTTACATAGCTCCTGCCAACAATGGCTTCAATTCCAATTTGTCTGATTTTAATTCTATTGGAGCAAACCCTAGGCTCCTTCGCTTGTTTTCCAGTGAAGCCCCTAAGAAAAAGAATTATGAGAACTTCTACCCCAAAGAAAAGAAGGAAGTTCCAAAGGGAGACGATTCGAAACAGGAATCTAAAGATGACTCAAACACAAAGACAGACGATCAAGAAAATTTTAAAGAGTTTTTCATGAAGCAATTTCAAAACATATTACCTTTGTTGGTGTTGGGGGTATTTCTTACGTTTTCGCTCGGTACTCGCGAACAACAGCAGATCAGCTTTCAAGAGTTTAAAAATAAGCTTTTGGAACCAGGCTTAGTAGACCATATTGTTGTTACAAATAAGTCAGTTGCCAAAGTATACGTAAGGAGCTCTCCCCGTAACCCAGCAGACAGTGAAGTTGTTCAAGGGACCCCCCCTGGACAAAGAACTGGTGGCCAGTATACGTACTATTTCAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGTTAGAGGAAGCTCAAGAAGCGCTAGGCATTGACCCTCATGATTACATTCCTGTTACATATTCATCTGAAATGGTTTGGTTTCAGGAGTTGTTGAGATTTGCTCCTACACTGATGCTTTTGGGAACTCTTCTCTATATGGGAAGGAAAATGCAAGGTGGACTTGGTGTTGGTGGTCCTGGTGGTGGTAAGGGCGGTCGTGGCATATTCAATATAGGAAAAGCCCATGTTACCAAAGTAGATAAAAATGCTAAAAACAAGGTTTTTTTCAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAACTTGGTGCAAAGATTCCAAAAGGTGCTCTTTTGGTGGGTCCTCCTGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGAGAATCTGCTGTGCCATTTCTTTCAATTTCTGGTTCAGATTTCATGGAAATGTTTGTTGGCGTTGGACCGTCCAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAATATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGGGACGTGGAGGTTTCTCTGGTGCCAATGATGAGCGTGAAAGTACTTTGAATCAATTATTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGGGTTGTTGTACTTGCAGGAACAAATAGACCTGATATCTTAGACAAAGCTCTGCTTAGGCCGGGGCGATTTGACCGCCAGATAACCATTGATAAGCCTGATATTAAAGGCCGTGACCAGATATTTCAGATCTACTTGAAAAAGATCAAACTTGACCATGAGCCTTCATATTTTTCACAAAGGCTTGCGGCGCTTACCCCAGGATTTGCTGGTGCTGACATTGCTAATGTTTGTAATGAAGCTGCTCTGATTGCTGCAAGAGGTGAGAAAACACAAGTCACAATGGAACATTTTGAGTCAGCAATTGATAGGATCATTGGTGGTCTGGAGAAGAGGAACAGGGTAATAAGCAAGCTTGAAAGGCGTACTGTTGCTTATCATGAATCAGGCCATGCTGTTGCAGGCTGGTTCTTGGAACATGCCGAACCTTTATTAAAAGTAACCATAGTTCCTCGCGGCACAGCAGCCCTTGGATTTGCCCAGTATGTTCCAAATGAGAACCTTCTCATGACAAAGGAGCAACTTTTTGATATGACTTGCATGACTCTTGGCGGTCGGGCTGCAGAGCAGGTTCTCATTGGGAGAATCTCAACTGGAGCGCAAAATGATTTGGAAAAGGTGACCAAGATGACGTATGCGCAAGTAGCTGTCTATGGTTTTAGTGACAAAGTTGGCCTTCTCTCTTTTCCTCAACGGGAAGACTCGTTTGAGATGTCAAAACCATACAGCAGCAAGACTGCTGCAATCATTGACAATGAAGTGCGTGAATGGGTAGGCAAAGCATATGAAAAAACAGTACAGCTTATTGAGGAACACAAGGAACAAGTGGCTAAAATTGCAGAGTTGCTGCTTGAAAAAGAGGTGCTTCACCAGGATGATTTACTTCAAGTTTTGGGTGAACGACCATTCAAGTCCGCCGAACCCACCAATTATGATAGATTTAAACAAGGTTTTGAAGAGGAGGGGGAAAGGGTAATAGAAAGCCCGGTCAATGAACCCGGCGAGAGTGGTGGATCTTCACCATTAGATCCCCAGGTTGTTCCCACATAG 2415 0.4348 MIFSRIGRSLSRSSRARNLLHGDGRFGTLVGASRTNGASFSDEGGFSRGYIAPANNGFNSNLSDFNSIGANPRLLRLFSSEAPKKKNYENFYPKEKKEVPKGDDSKQESKDDSNTKTDDQENFKEFFMKQFQNILPLLVLGVFLTFSLGTREQQQISFQEFKNKLLEPGLVDHIVVTNKSVAKVYVRSSPRNPADSEVVQGTPPGQRTGGQYTYYFNIGSVESFEEKLEEAQEALGIDPHDYIPVTYSSEMVWFQELLRFAPTLMLLGTLLYMGRKMQGGLGVGGPGGGKGGRGIFNIGKAHVTKVDKNAKNKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYFSQRLAALTPGFAGADIANVCNEAALIAARGEKTQVTMEHFESAIDRIIGGLEKRNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDSFEMSKPYSSKTAAIIDNEVREWVGKAYEKTVQLIEEHKEQVAKIAELLLEKEVLHQDDLLQVLGERPFKSAEPTNYDRFKQGFEEEGERVIESPVNEPGESGGSSPLDPQVVPT 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0220 804 PANTHER ATP-DEPENDENT PROTEASE 58 803 - -
Lal9g0220 804 SMART AAA_5 349 489 IPR003593 -
Lal9g0220 804 Gene3D Peptidase M41 570 771 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal9g0220 804 MobiDBLite consensus disorder prediction 89 118 - -
Lal9g0220 804 Pfam FtsH Extracellular 134 240 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Lal9g0220 804 ProSitePatterns AAA-protein family signature. 457 475 IPR003960 GO:0005524|GO:0016887
Lal9g0220 804 Gene3D - 297 486 IPR027417 -
Lal9g0220 804 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 253 753 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lal9g0220 804 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 779 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lal9g0220 804 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 58 803 - -
Lal9g0220 804 Gene3D - 488 564 - -
Lal9g0220 804 SUPERFAMILY FtsH protease domain-like 570 760 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal9g0220 804 MobiDBLite consensus disorder prediction 768 783 - -
Lal9g0220 804 Pfam AAA+ lid domain 516 554 IPR041569 -
Lal9g0220 804 Pfam Peptidase family M41 569 751 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal9g0220 804 CDD AAA 350 487 - -
Lal9g0220 804 Gene3D - 142 252 - -
Lal9g0220 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 560 IPR027417 -
Lal9g0220 804 MobiDBLite consensus disorder prediction 761 804 - -
Lal9g0220 804 Pfam ATPase family associated with various cellular activities (AAA) 354 486 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0220 Lal-Chr9 1354086 1359215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0220 1 804 Miscellaneous Gene Families AT2G29080 76.132 0.0 1172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0220 K08956 - gmx:100806656 1280.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0220 9 1354086 1359215 Lal9g0220 9 1354086 1359215 ECH
Lal1g0314 1 1905523 1920747 Lal9g0220 9 1354086 1359215 LSH
Lal2g0215 2 1260795 1265692 Lal9g0220 9 1354086 1359215 LSH